Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0660
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    27   2.6  
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb...    26   4.6  
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom...    26   6.0  
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    25   8.0  

>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +1

Query: 88  YNKSLNICSACTYVLIYSLYANIFVFLVCSVP 183
           Y  S N+C++ ++ LI++LY+     L+C VP
Sbjct: 521 YKSSFNLCTSVSHELIHNLYS-----LMCLVP 547


>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = -2

Query: 639 EPFRRSLATKHPRRRILYIRYGGFIKTGSVA*VTTSRRWFVSSFPNSDQLSHDV 478
           EP RR   +KH ++RIL + Y   I+ G +  +T+ +R        S+   HD+
Sbjct: 216 EPKRRFAPSKHEQKRILQLAYA--IRKGRI--LTSEQRAERERESQSNYADHDL 265


>SPAC6F6.12 |||autophagy associated protein
           Atg24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/63 (20%), Positives = 30/63 (47%)
 Frame = -2

Query: 315 LPHPNNESDAERTGSEYXXXXXXXXXFVDSASSIRHYERAMYSPRYRTNKKHEDICVQTI 136
           +P  + ++  ++TG+EY          +D+   +  Y  ++     R ++K +D  V+ +
Sbjct: 230 VPIESIQNALQQTGTEYANLTEKLTLLLDTIKDVESYAHSLKELLKRRDQKQQD--VEAL 287

Query: 135 NEY 127
            EY
Sbjct: 288 QEY 290


>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +3

Query: 585 YIKFCVVGVWLPNSSEMAQPILMKFRVHIGVGLI 686
           Y+   +   WL N SE   P   KF   +G G+I
Sbjct: 759 YVSELLSNSWLSNLSETQVPYDPKFAKQVGEGMI 792


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,959,768
Number of Sequences: 5004
Number of extensions: 61085
Number of successful extensions: 152
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)