Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0660
         (706 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0077 + 998506-998708,999141-999209,999287-999544,999790-99...    28   8.3  

>10_01_0077 +
           998506-998708,999141-999209,999287-999544,999790-999868,
           999972-1000064,1000147-1000174,1000223-1000227
          Length = 244

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 30/87 (34%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
 Frame = +1

Query: 322 TWPGRSMGGRKRSKSGPNRRLRYLGPSSL*Y*EANT-HYPV--LSSSVIANSKQTYVM-- 486
           TW  R     +R+ S P+  LRY  P  + Y EA     PV  L+S  I+    TY +  
Sbjct: 64  TWTRRGEHLLERALSTPSLFLRYAFPLLMNYMEAEAMRKPVGYLNSCRISQPNHTYTLDE 123

Query: 487 RKL-VRIGKRTYEPSPTCSHSRHRASL 564
           RKL   I   T E   T    RH+  L
Sbjct: 124 RKLPEHIKAMTPEERTTYIGQRHQEKL 150


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,797,278
Number of Sequences: 37544
Number of extensions: 380242
Number of successful extensions: 871
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)