Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0660
         (706 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082)                 31   1.2  
SB_14922| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_22126| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.9)           28   6.4  
SB_58507| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  

>SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082)
          Length = 1304

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/58 (25%), Positives = 30/58 (51%)
 Frame = +1

Query: 424 NTHYPVLSSSVIANSKQTYVMRKLVRIGKRTYEPSPTCSHSRHRASLNKTSISNI*NS 597
           N  YP+ SS++  N+K+ Y+  ++     +  E     S  + +AS  KT ++ + N+
Sbjct: 10  NRGYPISSSTLFPNAKRHYINLEMTHRNSKCTETLFRKSAKKSKASYYKTKVAKLKNT 67


>SB_14922| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 505

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 414 LRSQHTLPRIIIERDSKQQTNLRHEKV-GPNWETNLRTISD 533
           L SQ   P++I    S + +N RH  + GP+ + ++  +SD
Sbjct: 228 LSSQKKTPKVIYSPTSSRSSNKRHSSLPGPSRQRSITNVSD 268


>SB_22126| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.9)
          Length = 460

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +3

Query: 375 QTFKISWPQ--LSLILRSQHTLPRIIIERDSKQQTNLRHE 488
           Q + +SWPQ  L + +R   T+ + +IER   +QT  R +
Sbjct: 23  QRYHLSWPQGLLPVHMRHTETVSKHLIERQIARQTERRKD 62


>SB_58507| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2353

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +2

Query: 566  IKPPYLIYKILRRGCLVAKLLRNGSTDSYE 655
            +KP  L Y++ +  CLV  +LR+G+  S++
Sbjct: 2296 VKPYQLAYQLQQGPCLVMAVLRDGAVTSFD 2325


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,092,108
Number of Sequences: 59808
Number of extensions: 451833
Number of successful extensions: 951
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)