Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0660
         (706 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g27070.1 68416.m03386 mitochondrial import receptor subunit T...    28   5.2  
At1g43680.1 68414.m05018 hypothetical protein                          28   5.2  
At4g18750.1 68417.m02771 pentatricopeptide (PPR) repeat-containi...    27   9.2  

>At3g27070.1 68416.m03386 mitochondrial import receptor subunit
           TOM20-1 / translocase of outer membrane 20 kDa subunit 1
           (TOM20-1) identical to mitochondrial import receptor
           subunit TOM20-1 SP:P82872 from [Arabidopsis thaliana]
          Length = 188

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/19 (68%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = -3

Query: 674 PDMHTKFHKNR-LSHFGGV 621
           P +HT FHKNR LS  GGV
Sbjct: 127 PQLHTGFHKNRLLSLLGGV 145


>At1g43680.1 68414.m05018 hypothetical protein
          Length = 247

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 656 FHKNRLSHFGGVWQPNTHDAEFYILDM 576
           F  NRLSH G +  P T   E  IL++
Sbjct: 29  FASNRLSHLGRILNPQTQSVERAILEL 55


>At4g18750.1 68417.m02771 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 871

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +1

Query: 424 NTHYPVLSSSVIANSKQTYVMRKL-VRIGKRTYEPSPTCSHSRHRASLN 567
           NT Y VL +++ A +++   +++L  RIG+R    +P CS    +  +N
Sbjct: 701 NTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVN 749


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,254,645
Number of Sequences: 28952
Number of extensions: 315614
Number of successful extensions: 748
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)