Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0659
         (696 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    64   8e-13
AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450 ...    22   5.5  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    21   7.3  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   7.3  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 64.5 bits (150), Expect = 8e-13
 Identities = 43/132 (32%), Positives = 61/132 (46%)
 Frame = +3

Query: 213 SLQRNAYQVDSRLIIRGVSKSDSGLYVCSLYNRYTGEVVKANYTNLQVVTRPKITLRPAN 392
           +L     QV   LIIR     DSG Y+C + N   GE V+   T L V    K  + P  
Sbjct: 280 TLNDRVKQVAGTLIIREAKVEDSGKYLCVVNNSVGGESVE---TVLTVTAPLKAKIEPQV 336

Query: 393 QTVRPGQSLTVECLVEGDEILDVTWRYDREPSRRVEIRGPVLVFNNIEVEDAGIYYCIAR 572
           QT+  G+  T  C  EG+ I  ++W  D  P   ++    VL   ++  ED G+Y C  R
Sbjct: 337 QTIDFGRPATFTCNFEGNPIKTISWLKDGHP---IDHNEAVLRIESVRKEDKGMYQCFIR 393

Query: 573 SRYGNDTATANV 608
           +   +  ATA +
Sbjct: 394 NDQESAEATAEL 405



 Score = 58.8 bits (136), Expect = 4e-11
 Identities = 38/144 (26%), Positives = 70/144 (48%), Gaps = 13/144 (9%)
 Frame = +3

Query: 240  DSRLIIRGVSKSDSGLYVCSLYNRYTGEVVKANYTNLQVVTRPKITLRPANQTVRPGQSL 419
            D  L I  + K++ G Y+C   N   G  + A    + V   P+  ++  NQT R G   
Sbjct: 757  DGTLTINNIQKTNEGYYLCEAVNGI-GSGLSA-VIQISVQAPPQFDIKLRNQTSRRGDPA 814

Query: 420  TVECLVEGDEILDVTWRYDR---EPS--RRVEIRGPVL---VFNNIEVE-----DAGIYY 560
             ++C  +G++ + + W  +    EP    R  IR  +L   V + + ++     D+ ++ 
Sbjct: 815  VLQCEAKGEKPIGILWNINNKRLEPKGDNRYTIREEILANGVLSGLSIKRTERSDSALFT 874

Query: 561  CIARSRYGNDTATANVIVTEIPIV 632
            C+A + +G+D  + N+IV E+P V
Sbjct: 875  CVATNAFGSDDTSINMIVQEVPEV 898



 Score = 57.2 bits (132), Expect = 1e-10
 Identities = 41/141 (29%), Positives = 62/141 (43%), Gaps = 12/141 (8%)
 Frame = +3

Query: 249 LIIRGVSKSDSGLYVCSLYNRYTGEVVKANYTNLQVVTRPKITLRPANQTVRPGQSLTVE 428
           L I  V K D G+Y C + N        A          P+I      +TV+PG S+ ++
Sbjct: 375 LRIESVRKEDKGMYQCFIRNDQESAEATAELKLGGRFEPPQIRHAFNEETVQPGNSVFLK 434

Query: 429 CLVEGDEILDVTWR-YDREPSRR--------VEIRGPVLVFNNI---EVEDAGIYYCIAR 572
           C+  G+   ++TW  Y R  S          V + G V+   NI      D G+Y C+A 
Sbjct: 435 CIASGNPTPEITWELYGRRLSNSERNQIGQYVTVNGDVVSHLNITAIHTNDGGLYRCVAS 494

Query: 573 SRYGNDTATANVIVTEIPIVR 635
           S+ G+   +A + V  +P VR
Sbjct: 495 SKVGSADHSARINVYGLPFVR 515



 Score = 39.1 bits (87), Expect = 3e-05
 Identities = 35/139 (25%), Positives = 55/139 (39%), Gaps = 11/139 (7%)
 Frame = +3

Query: 243  SRLIIRGVSKSDSGLYVCSLYNRYTGEVVKANYTNLQVVTRPKITLRPANQTVRPGQSLT 422
            S L I  V  +  G Y C   N  +   V    T+L +   P+  L P ++    G    
Sbjct: 661  STLSIDNVQSTHVGNYTCLASNSAS---VTTYTTSLFINVPPRWILEPTDKAFAQGSDAA 717

Query: 423  VECLVEGDEILDVTWR----------YDREPSR-RVEIRGPVLVFNNIEVEDAGIYYCIA 569
            VEC  +G     VTW+           D +P+   +++    L  NNI+  + G Y C A
Sbjct: 718  VECKADGFPRPVVTWKRATGVSPGDYKDFKPNNPDIKVEDGTLTINNIQKTNEGYYLCEA 777

Query: 570  RSRYGNDTATANVIVTEIP 626
             +  G+  +    I  + P
Sbjct: 778  VNGIGSGLSAVIQISVQAP 796



 Score = 36.3 bits (80), Expect = 2e-04
 Identities = 35/147 (23%), Positives = 61/147 (41%), Gaps = 7/147 (4%)
 Frame = +3

Query: 237 VDSRLIIRGVSKSDSGLYVCSLYNRYTGEVVKANYT-NLQVVTRPKITLRPANQTVRPGQ 413
           V S L I  +  +D GLY C      + +V  A+++  + V   P +      Q +  G 
Sbjct: 472 VVSHLNITAIHTNDGGLYRCVA----SSKVGSADHSARINVYGLPFVRSME-KQAIVAGG 526

Query: 414 SLTVECLVEGDEILDVTWRYDREP-----SRRVEIRGPVLVFNNIEVEDAGIYYCIARSR 578
           +L V C   G  +  V W  D         ++V I G +++ N     D   Y C+A++ 
Sbjct: 527 TLIVHCPFAGHPVDSVVWERDGRQLPINRKQKVFINGTLIIENVERASDQATYDCVAKNS 586

Query: 579 YG-NDTATANVIVTEIPIVRPWIYNNE 656
            G +   +  V V   P + P+ +  +
Sbjct: 587 QGYSARGSLEVQVMVPPQILPFDFGED 613



 Score = 30.3 bits (65), Expect = 0.016
 Identities = 35/141 (24%), Positives = 54/141 (38%), Gaps = 18/141 (12%)
 Frame = +3

Query: 249 LIIRGVSKSDS-GLYVCSLYNRYTGEVVKANYTNLQVVTRPKITLRPANQTV-------- 401
           L IR V   D    Y C   +R TGE   +      V+T P  T  PA  T         
Sbjct: 185 LHIRDVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPVGTKAPAFSTDIKVLGYQR 244

Query: 402 RPGQSLTVECLVEGDEILDVTW-RYDREPSR--------RVEIRGPVLVFNNIEVEDAGI 554
              Q++ + C  +G       W ++    +R        RV+     L+    +VED+G 
Sbjct: 245 HSKQNVALLCPAQGFPSPSFRWYKFVEGTTRKQAVTLNDRVKQVAGTLIIREAKVEDSGK 304

Query: 555 YYCIARSRYGNDTATANVIVT 617
           Y C+  +  G ++    + VT
Sbjct: 305 YLCVVNNSVGGESVETVLTVT 325



 Score = 29.1 bits (62), Expect = 0.036
 Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
 Frame = +3

Query: 411  QSLTVECLVEGDEILDVTWR-----YDREPSRRVEIRGPVLVFNNIEVEDAGIYYCIARS 575
            + +T+ CL  G     +TW+     +      R +  G + +  ++   +AG Y C   +
Sbjct: 1322 EDVTLPCLAVGLPPPVITWKIKGVQFTTSDKIRQQPDGSLFI-RDVSRNNAGEYSCHVEN 1380

Query: 576  RYGNDTATANVIVTEIP 626
             YG D+ T  +IV   P
Sbjct: 1381 DYGQDSVTHQLIVNAPP 1397


>AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q4 protein.
          Length = 491

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 633 RPWIYNNEQYRI 668
           RPWIYN   Y +
Sbjct: 216 RPWIYNETIYSL 227


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -2

Query: 692 RTASDAARNAVLF 654
           R ASDAAR  VL+
Sbjct: 132 RAASDAARRGVLY 144


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -2

Query: 692 RTASDAARNAVLF 654
           R ASDAAR  VL+
Sbjct: 288 RAASDAARRGVLY 300


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,741
Number of Sequences: 336
Number of extensions: 3356
Number of successful extensions: 20
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18322480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)