Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0659
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    28   1.1  
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    27   1.9  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    27   3.4  
SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase YakC|Schizo...    27   3.4  
SPCC737.04 |||S. pombe specific UPF0300 family protein 6|Schizos...    27   3.4  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    26   4.5  
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac...    26   4.5  
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    26   5.9  
SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ...    25   7.8  
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual    25   7.8  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   7.8  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    25   7.8  

>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
 Frame = +3

Query: 504 RGPVLVFNNIE--VEDAGIYYCIA-RSRYG----NDTATANVIVTEIPIVRPWIYN 650
           R   L  N+I   V +  + Y +  R RYG    ++    + ++ ++P++ PW YN
Sbjct: 435 RADALFINSIREGVSNLALEYVVCQRDRYGMVLLSEFTATSAMLHDVPLINPWDYN 490


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -3

Query: 553 MPASSTSMLLKTRTGPRISTRLEGSLSYLQVTSRISSPSTRHSTVSD 413
           MPA S  + L+ R   + +  L+ S S +  TS  +SP+T H  + D
Sbjct: 614 MPAESIHLFLQPRNFFKHNPALDTSSS-VNSTSEATSPNTHHENLRD 659


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -3

Query: 574 LRAMQ*YMPASSTSMLLKTRTGPRISTRLEGSLSYLQVTSRISSPSTRHS 425
           L AM+ Y PA+S S+ +K   GP      E   +Y+   +  ++ S R S
Sbjct: 19  LHAMERYKPATSESLYVKGHYGPH--PHKEHPAAYVAAKTGFNATSRRQS 66


>SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase
           YakC|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +3

Query: 339 YTNLQVVTRPKITLRPANQTVRPGQSLTVECLVEGDEILDV 461
           Y NL++VT+ +  +  AN  + PGQ      L +GD+IL +
Sbjct: 243 YKNLELVTKIE-KIATANN-ITPGQLSLAWLLAQGDDILPI 281


>SPCC737.04 |||S. pombe specific UPF0300 family protein
           6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 242 FTFDHPWCIQERLRLVRL*FVQP 310
           +T  H WC+Q+R+  +R+  V+P
Sbjct: 214 YTKFHLWCVQKRIGNIRMYLVRP 236


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 451 ISSPSTRHSTVSD*PGRTVWLAGLN 377
           IS   T+H+ +SD P R + L G+N
Sbjct: 86  ISEQDTQHNHISDFPSRRMQLDGMN 110


>SPCC777.14 |prp4||serine/threonine protein kinase
           Prp4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 477

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 294 CSLYNRYTGEVVKANYTNLQVV 359
           CSLY  YTG+++    TN Q++
Sbjct: 348 CSLYELYTGQILFPGRTNNQML 369


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/79 (18%), Positives = 36/79 (45%)
 Frame = +3

Query: 390 NQTVRPGQSLTVECLVEGDEILDVTWRYDREPSRRVEIRGPVLVFNNIEVEDAGIYYCIA 569
           + +++  + +  EC     +I+    R+DREP R ++     +  ++  + D G    +A
Sbjct: 231 DSSLKTAERIKEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTI-DVGFERFLA 289

Query: 570 RSRYGNDTATANVIVTEIP 626
              + N    ++  +T +P
Sbjct: 290 PEIFFNPEIASSDFLTPLP 308


>SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination
           repair protein Sfr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 274 LLDTPRMIKRESTWYAFLCSDCLSPRS 194
           L  TP  IKR+   +    S+CL+P+S
Sbjct: 149 LRTTPNSIKRQKRLFKSPISNCLNPKS 175


>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 613

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 291 VCSLYNRYTGEVVKANYTNLQ 353
           V SLYNR   + V+  YT+++
Sbjct: 312 VVSLYNRINSQTVRTKYTSIE 332


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = +3

Query: 513  VLVFNNIEVEDAGIYYCIARSRYGNDTATANVIVTEIPIVRPWIYNNEQYRIPSRVTG 686
            +L   N+E   + I  C+AR+  G   A A  ++ ++ I   W+  NE   + +R  G
Sbjct: 1576 LLHLENVETRTSTITSCLARNLRGGLGAGAVEMIEKLCIPESWL--NEAKALYARYVG 1631


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +3

Query: 600 ANVIVTEIPIVRPWIYNNEQYRIPSRV 680
           AN I+T     RPW   N  Y IP  +
Sbjct: 238 ANGIITPPTWTRPWCSTNVDYTIPEPI 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,728,372
Number of Sequences: 5004
Number of extensions: 55779
Number of successful extensions: 152
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)