Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0659
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0867 - 11928040-11928345,11928455-11928961,11929071-11929379     33   0.29 
10_08_0459 + 18092656-18092724,18092827-18092886,18092970-180930...    30   1.5  
11_06_0477 + 24057677-24059099,24059556-24060448,24060456-240605...    29   4.7  
11_01_0485 + 3728686-3728863,3729933-3730095,3730508-3730549,373...    29   4.7  
04_04_1467 - 33808507-33808588,33808869-33808942,33809028-338091...    29   4.7  
07_03_1281 - 25439634-25439750,25439868-25440071,25440328-254404...    28   8.1  

>03_02_0867 - 11928040-11928345,11928455-11928961,11929071-11929379
          Length = 373

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
 Frame = +3

Query: 138 NEPEITMFCNSSEGFNARWDRGD---RQSLQRNAYQVDSRLIIRGVS-KSDSGLYVCSLY 305
           NEP + +FC + EGF+     G      +  R+ YQ   + +    S K + G    +L 
Sbjct: 196 NEPTVRIFCKADEGFSVTVRGGSVCLAPTNPRDEYQHWIKDMRHSNSIKDEEGYPAFALV 255

Query: 306 NRYTGEVVK 332
           NR TGE +K
Sbjct: 256 NRVTGEAIK 264


>10_08_0459 + 18092656-18092724,18092827-18092886,18092970-18093038,
            18093134-18093178,18093706-18094332,18094424-18094597,
            18094688-18094991,18095070-18095161,18095253-18095319,
            18095407-18095478,18095613-18095830,18095979-18096113,
            18096225-18096520,18096603-18096774,18096860-18096958,
            18097048-18097179,18097273-18097373,18097460-18097649,
            18097713-18097751
          Length = 986

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/91 (20%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
 Frame = +3

Query: 141  EPEITMFCNSSEGFNARWDRGDRQSLQRNAYQVDSRLIIRGVSKSDSGLYVCSLYNRYTG 320
            EP +T   N+ + F   WD+ +   +  + +++    ++  +S +DSG++V      ++ 
Sbjct: 871  EPIMTQLINNLQTF---WDKFECSPMNFSNFKLKFPSVLAHISSADSGIFVMKSMELWSP 927

Query: 321  EVV------KANYTNLQVVTRPKITLRPANQ 395
             V+        N +N++V    +I   P+N+
Sbjct: 928  RVILQNEFSNDNISNIRVQYANRIFFHPSNK 958


>11_06_0477 +
           24057677-24059099,24059556-24060448,24060456-24060578,
           24060995-24061036
          Length = 826

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 57  GSGDDEFPVDYNPNNPTGRSDTLIAYENE 143
           G  DDEFP DY+        D ++ ++NE
Sbjct: 147 GHADDEFPQDYDIMYQNFEDDDVVGFDNE 175


>11_01_0485 +
           3728686-3728863,3729933-3730095,3730508-3730549,
           3730833-3730927,3731273-3731334,3731416-3731507,
           3731587-3731722,3731818-3731904,3732430-3732519,
           3732969-3733071,3733616-3733716,3733837-3733971,
           3734006-3734093,3734484-3734544,3734626-3734689,
           3735219-3735347
          Length = 541

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 307 LYKLQTYKPESLLDTPRMIKRESTWYAFLC 218
           LY  +   P +LL  P    RES WY F+C
Sbjct: 489 LYWFRVSMPRNLLP-PDAANRESCWYGFMC 517


>04_04_1467 -
           33808507-33808588,33808869-33808942,33809028-33809194,
           33809392-33809461,33809544-33809681
          Length = 176

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = -2

Query: 431 TLDRER----LTRSDRLVGRPQRYLRSGHDLEISVVRLHHL 321
           TL+RE     L  +D LV RP +Y R   D+ +    LHHL
Sbjct: 77  TLNRELQLHILELADILVERPSQYARRVEDISLIFKNLHHL 117


>07_03_1281 -
           25439634-25439750,25439868-25440071,25440328-25440402,
           25440477-25440631,25440704-25440824,25440946-25441020,
           25441216-25441353,25441617-25441727,25441883-25441987,
           25442061-25442139,25442488-25442549,25442634-25442699,
           25442812-25442907,25443353-25443403,25443629-25443709
          Length = 511

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 90  NPNNPTGRSDTLIAYENEPEITMFCNS 170
           NP NPTG+   ++A EN+ +I  FC +
Sbjct: 256 NPGNPTGQ---VLAEENQKKIVEFCKN 279


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,454,157
Number of Sequences: 37544
Number of extensions: 389414
Number of successful extensions: 962
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)