Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0659
         (696 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g42670.1 68415.m05281 expressed protein                             29   2.9  
At4g16660.1 68417.m02517 heat shock protein 70, putative / HSP70...    28   5.1  
At4g05616.1 68417.m00870 hypothetical protein                          28   5.1  
At3g51840.1 68416.m05685 short-chain acyl-CoA oxidase identical ...    28   5.1  
At1g72330.1 68414.m08367 alanine aminotransferase, putative simi...    28   6.8  

>At2g42670.1 68415.m05281 expressed protein
          Length = 241

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
 Frame = +3

Query: 411 QSLTVECLVEGDEILDVTWRYDREPS-----RRVEIRGPVL 518
           + L  E  V+G+ + DVTW  + +P      RR+  RGPV+
Sbjct: 199 EDLPGELEVDGEVVTDVTWLEEFQPPDDFVIRRIPYRGPVI 239


>At4g16660.1 68417.m02517 heat shock protein 70, putative / HSP70,
           putative
          Length = 867

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +3

Query: 369 KITLRPANQTVRPGQSLTVECLVEGDEILDVTWRYDREPSRRVEIR 506
           +I L+   +TV PG   + E L E    L+   + DRE  R  E++
Sbjct: 618 RIPLKVVEKTVGPGAPFSKESLAEAKIKLEALDKKDRERRRTAELK 663


>At4g05616.1 68417.m00870 hypothetical protein
          Length = 346

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 21/84 (25%), Positives = 35/84 (41%)
 Frame = +3

Query: 345 NLQVVTRPKITLRPANQTVRPGQSLTVECLVEGDEILDVTWRYDREPSRRVEIRGPVLVF 524
           +L++++ P + LR   + ++ G S    C++ G    + T      P   VE   P L  
Sbjct: 226 HLELIS-PNLALRARKRALKAGPS----CIMRGKTSPEHTITKPTRPE--VEEESPTLGL 278

Query: 525 NNIEVEDAGIYYCIARSRYGNDTA 596
           N      A + YC     YG  T+
Sbjct: 279 NTASCTRAKLQYCELHKSYGRHTS 302


>At3g51840.1 68416.m05685 short-chain acyl-CoA oxidase identical to
           Short-chain acyl CoA oxidase [Arabidopsis thaliana]
           GI:5478795; contains InterPro entry IPR006089: Acyl-CoA
           dehydrogenase
          Length = 436

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +1

Query: 256 SVVYPRATPACTFVVCTT 309
           SV +P+ATPA TF  CT+
Sbjct: 29  SVAFPQATPASTFPPCTS 46


>At1g72330.1 68414.m08367 alanine aminotransferase, putative similar
           to alanine aminotransferase 2 SP|P34106 from Panicum
           miliaceum, SP|P52894 from Hordeum vulgare, GI:4730884
           from Oryza sativa
          Length = 540

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = +3

Query: 90  NPNNPTGRSDTLIAYENEPEITMFCNSSEGFNARWDRGDRQSLQRNAYQVDSR 248
           NP NPTG+   ++A EN+ +I  FC   EG     D    +  Q N Y  D +
Sbjct: 285 NPGNPTGQ---VLAEENQRDIVNFC-KQEGLVLLAD----EVYQENVYVPDKK 329


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,523,305
Number of Sequences: 28952
Number of extensions: 303990
Number of successful extensions: 798
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)