Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0658
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S...    27   2.2  
SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual           27   2.9  
SPBC839.03c |||neddylation protein Dcn1|Schizosaccharomyces pomb...    25   8.9  

>SPBC336.05c
          |||S-adenosylmethionine-
          dependentmethyltransferase|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 378

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = -3

Query: 80 AKFYPPLHLRRK*KYF*LIE 21
          + FYPPLH++R+ K F +++
Sbjct: 4  SSFYPPLHVQRRRKLFKILQ 23


>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 604

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 521 IPSCPSLYVTY*DSSEHKKIMVGIFFG*PMLST 423
           +PSCPSLY  +  S   +K     +F  P+ +T
Sbjct: 302 LPSCPSLYDLFFASPVFRKRTSSFYFSQPLKAT 334


>SPBC839.03c |||neddylation protein Dcn1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +2

Query: 167 VDFFQIYLKNIFPNID 214
           ++FFQI LK+ FP +D
Sbjct: 169 IEFFQILLKDTFPLLD 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,415,653
Number of Sequences: 5004
Number of extensions: 47974
Number of successful extensions: 95
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)