Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0657
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    30   0.38 
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip...    29   0.89 
SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr ...    27   3.6  
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    26   6.3  

>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = -1

Query: 692 SIDTKPTHPIYIFLPTKFFFITTQKCLYNGLY*GNSHMLQSLDYGSFAY*RR-RLTFSKF 516
           S+ +  THPIY F+  + +F++  +  Y  L   N  + + +D     Y  +  +T    
Sbjct: 256 SLKSFTTHPIYSFIQERKYFLSYVENRYQSLDCWNKFLEKEIDPSFIKYCTKLEVTAGCT 315

Query: 515 LIKSVEQRTQRN*QNI 468
           LI  +  R Q +  NI
Sbjct: 316 LISYIADRLQNSHPNI 331


>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
           antiporter Sod22|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
 Frame = -3

Query: 624 PEMFI*WTLLRKFTYAPVPRLRFVRLLK-----TATDILEISYQVGRATNTEKLTEH 469
           P M   W +   F YA +PRL F+  L      TATD +  S  VG+     ++  H
Sbjct: 108 PVMIFGWLVSTGFMYALIPRLSFLESLAIAACITATDPVLASSIVGKGKFARRVPGH 164


>SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 188

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +1

Query: 328 PLISITKSMMAFTLLCLCILFLSSVNQIAATEK 426
           P     K ++  T++C+ ILF  SV ++    K
Sbjct: 42  PFAGRVKHVLKITIICILILFADSVRRVVRVTK 74


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +1

Query: 481 FLCVRCSTDLIRNFENVSRRLQ*ANEP*SRDWSICE 588
           FLC  C T +I + E++++  Q +NE  S   S+CE
Sbjct: 765 FLCRECLTHVITSSEDMAK--QTSNENISPKCSVCE 798


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,985,465
Number of Sequences: 5004
Number of extensions: 63999
Number of successful extensions: 150
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)