Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0657
         (722 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0715 - 20352613-20352852,20352926-20352982,20354208-203543...    29   2.8  
12_02_1041 + 25626210-25626595,25628607-25630542,25630572-25630613     29   4.9  
05_02_0020 + 5665428-5665646,5665716-5665949                           29   4.9  
09_01_0113 + 1751204-1751507,1751791-1752039,1753136-1753398,175...    28   8.6  

>08_02_0715 -
           20352613-20352852,20352926-20352982,20354208-20354339,
           20354754-20354828,20355779-20355943,20356031-20356263,
           20356484-20356574,20356789-20357223,20357911-20357976,
           20358688-20358807,20358915-20359121
          Length = 606

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -3

Query: 573 VPRLRFVRLLKTATDILEISYQVGRATNTEKLTEH 469
           +PR R  RLL      LE+S  V R T+  +L EH
Sbjct: 89  LPRERIDRLLDPGASFLELSQMVSRPTDQLQLYEH 123


>12_02_1041 + 25626210-25626595,25628607-25630542,25630572-25630613
          Length = 787

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +3

Query: 474 LSISLCSLLDRL--DKKFRECQSPSSVSERTVIEGLEH 581
           LS+S+C +L R   D K R  + PSS  + +V   LEH
Sbjct: 167 LSLSVCYILHRRRRDSKIRPVKLPSSSRDESVEPDLEH 204


>05_02_0020 + 5665428-5665646,5665716-5665949
          Length = 150

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 113 KKEN*TLTEFINMNLFGSWIRQHYGRKSFILLD 211
           K+ N +L E      F +W+R  Y RK F+ +D
Sbjct: 67  KRANPSLEEEAKFAKFQAWVRGEYARKGFVEVD 99


>09_01_0113 +
           1751204-1751507,1751791-1752039,1753136-1753398,
           1755192-1755357,1755445-1755534,1756376-1756674,
           1757022-1757231
          Length = 526

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +3

Query: 327 TIDFNYKINDGIHVALSVHLIFIFSQSNCCHREKCLKNT*FTEA 458
           T+DFN ++   I VA ++  + ++++    HR+    N   TE+
Sbjct: 333 TLDFNQRLEIAIDVAHALTYLHLYAEKTIIHRDVKSSNILLTES 376


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,821,945
Number of Sequences: 37544
Number of extensions: 321019
Number of successful extensions: 551
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)