Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0657
         (722 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81576-7|CAB04645.2|  164|Caenorhabditis elegans Hypothetical pr...    33   0.27 
Z73977-1|CAA98290.1|  573|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U41021-4|AAA82334.1|  348|Caenorhabditis elegans Uncoordinated p...    28   5.9  
AF035583-1|AAD09435.1|  348|Caenorhabditis elegans UNC-97 protein.     28   5.9  
U53341-7|AAC69111.3|  744|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>Z81576-7|CAB04645.2|  164|Caenorhabditis elegans Hypothetical
           protein R10E8.2 protein.
          Length = 164

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 29/103 (28%), Positives = 49/103 (47%)
 Frame = +3

Query: 120 KIEH*QNLST*ISLVRGFVNITDESHLYC*THIEILLWSCRMNNESNLYISLKTFWGLRT 299
           K+ H +N+   I L++GF+      H      + I + S  +    NL +  K F GL++
Sbjct: 37  KLPHWKNIE--ILLIKGFIVSAPIEHFIHLPEVTITMQSITI---PNLKLLKKHFLGLKS 91

Query: 300 LKLYIFIA*TIDFNYKINDGIHVALSVHLIFIFSQSNCCHREK 428
            K ++         YK+ DG  +A +VH +F  + S+C  R K
Sbjct: 92  EKKFVL-------KYKL-DGGEIANNVHAVFDQASSSCKGRVK 126


>Z73977-1|CAA98290.1|  573|Caenorhabditis elegans Hypothetical
           protein T28B11.1 protein.
          Length = 573

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = +3

Query: 453 EAPVNDVLSISLCSLLDRLDKKFRECQSPSSVSERT 560
           E  VNDV   + CS L+R  +K  +  SPSS   RT
Sbjct: 195 EYDVNDVFFKNFCSFLER--EKIEDPMSPSSYKGRT 228


>U41021-4|AAA82334.1|  348|Caenorhabditis elegans Uncoordinated
           protein 97 protein.
          Length = 348

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +2

Query: 350 Q*WHSRCFVCASYF 391
           Q WHS CFVCA  F
Sbjct: 40  QVWHSECFVCAQCF 53


>AF035583-1|AAD09435.1|  348|Caenorhabditis elegans UNC-97 protein.
          Length = 348

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +2

Query: 350 Q*WHSRCFVCASYF 391
           Q WHS CFVCA  F
Sbjct: 40  QVWHSECFVCAQCF 53


>U53341-7|AAC69111.3|  744|Caenorhabditis elegans Hypothetical
           protein F49E10.1 protein.
          Length = 744

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +1

Query: 106 LYQKGKLNTDRIYQHESLWFVDSSTLRTKVIY 201
           L++K  LNT R Y+++S   +DS T+R  + +
Sbjct: 397 LFEKITLNTWRSYENKSGVIIDSGTVRKHIFF 428


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,087,144
Number of Sequences: 27780
Number of extensions: 341485
Number of successful extensions: 875
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)