Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0657
         (722 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g50010.1 68416.m05468 DC1 domain-containing protein contains ...    30   1.8  
At1g22930.1 68414.m02866 T-complex protein 11 contains Pfam PF05...    27   9.5  

>At3g50010.1 68416.m05468 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 769

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 21/59 (35%), Positives = 31/59 (52%)
 Frame = +3

Query: 99  TNTVPKRKIEH*QNLST*ISLVRGFVNITDESHLYC*THIEILLWSCRMNNESNLYISL 275
           +++ PKR +E    +S  ISL+   + +  E  L   TH +IL     MN+ S  YISL
Sbjct: 144 SDSQPKRLVELISFISQKISLIDETLEVKPEPELISLTH-QILSLVVSMNSNSGEYISL 201


>At1g22930.1 68414.m02866 T-complex protein 11 contains Pfam
           PF05794: T-complex protein 11
          Length = 1131

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 9/31 (29%), Positives = 23/31 (74%)
 Frame = +3

Query: 492 SLLDRLDKKFRECQSPSSVSERTVIEGLEHM 584
           SLLDRL+ +    ++ ++VS+ ++++ ++H+
Sbjct: 338 SLLDRLEIRLEASKNVTTVSQPSILDNIDHL 368


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,757,551
Number of Sequences: 28952
Number of extensions: 300131
Number of successful extensions: 646
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)