Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0656
         (642 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...   167   2e-40
UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: L...    44   0.003
UniRef50_UPI0000E46784 Cluster: PREDICTED: similar to endonuclea...    33   5.9  
UniRef50_Q9SFB3 Cluster: F17A17.35 protein; n=5; Magnoliophyta|R...    33   5.9  

>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score =  167 bits (406), Expect = 2e-40
 Identities = 77/83 (92%), Positives = 77/83 (92%)
 Frame = -1

Query: 639  FYHRTARHRSRVHPYYLEPLXSSTVHFQRSFLPRTIRLWNELTSTVFPEHYDMSFFKRGL 460
            FYHRTARHRSRVHPYYLEPL SSTV FQRSFLPRTIRLWNEL STVFPE YDMSFFKRGL
Sbjct: 904  FYHRTARHRSRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTVFPERYDMSFFKRGL 963

Query: 459  WRVLSSRQRLGSALGIAEVHGRR 391
            WRVLS RQRLGSA GIAEVHGRR
Sbjct: 964  WRVLSGRQRLGSAPGIAEVHGRR 986


>UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: Like
           moricin - Manduca sexta (Tobacco hawkmoth) (Tobacco
           hornworm)
          Length = 248

 Score = 44.0 bits (99), Expect = 0.003
 Identities = 20/29 (68%), Positives = 23/29 (79%)
 Frame = -2

Query: 401 MGDGNHLPSGGPYARLPTKAIKKKKTTMF 315
           MGDGNH PSG PYA LPT+A K K T++F
Sbjct: 1   MGDGNHSPSGRPYASLPTRA-KMKLTSLF 28


>UniRef50_UPI0000E46784 Cluster: PREDICTED: similar to
           endonuclease/reverse transcriptase; n=1;
           Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
           endonuclease/reverse transcriptase - Strongylocentrotus
           purpuratus
          Length = 576

 Score = 33.1 bits (72), Expect = 5.9
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -1

Query: 603 HPYYLEPLXSSTVHFQRSFLPRTIRLWNELTSTVFPEHYDMSFFKRGLWRVL 448
           H  +   +   T  ++ +F PRTIR WN L+ ++F     +  FK  LW  +
Sbjct: 401 HNLFFSNIRCKTDIYRLTFFPRTIRAWNLLSPSIFACD-AVETFKARLWEAI 451


>UniRef50_Q9SFB3 Cluster: F17A17.35 protein; n=5; Magnoliophyta|Rep:
           F17A17.35 protein - Arabidopsis thaliana (Mouse-ear
           cress)
          Length = 374

 Score = 33.1 bits (72), Expect = 5.9
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = +3

Query: 399 HGLQQCQEQSQAAAYCLILSTSLV*RRTCHSARETPWR*AHSIAGWYVAKKTSG 560
           +GL+ C  ++ ++  CLILS  +  R    + ++TP         W  AKKTSG
Sbjct: 292 NGLEVCSIEADSSKGCLILSVGIATRYVYATYKKTPVT-TDEAEAWESAKKTSG 344


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 680,605,485
Number of Sequences: 1657284
Number of extensions: 13978147
Number of successful extensions: 30079
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 29138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30074
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48126133708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)