Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0656
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    28   1.00 
SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic enzyme|Schizosaccha...    27   3.0  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   5.3  
SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine trans...    25   7.0  
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    25   9.3  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    25   9.3  

>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 28.3 bits (60), Expect = 1.00
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +2

Query: 404 TSAMPRAEPSRCLLLNTLHKPRLKKDMS*CSGNTVEVSSFHSRMVRG 544
           TS++P    S   + NTL  P L  + S    +TV  + FH+  + G
Sbjct: 740 TSSVPTQHNSFDAMHNTLRSPSLNSNNSSAHASTVSRNPFHNLKISG 786


>SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 328

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 372 T*W*VVTVAHGLQQCQEQSQAAAYCLILST 461
           T W +V++ HGLQ C + +   A+ ++ +T
Sbjct: 201 TNWTLVSLNHGLQSCMDPNTINAHLVVSAT 230


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = -1

Query: 561  FQRSFLPRTIRLWNELTSTVFPEHYDMSFFKRGLWRVLSSRQRLGSALGIAEVHG 397
            F++  LP+   ++ E     FPE  +    ++   R L+    +G  LG+ + HG
Sbjct: 2179 FEKKILPKFPPVFYEWFVESFPEPNNWVTSRQNYCRTLAVMSIVGYVLGLGDRHG 2233


>SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine
           transporter Hut1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 296 DKFNPFYLSTVTLSRKIFIWMIA 228
           +KF    L T+TL+RKIF  +++
Sbjct: 257 EKFGSITLVTITLTRKIFTMLLS 279


>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 525 IAGWYVAKKTSGNA-LWMTXVAPGSMDELYSGGGRCDG 635
           I  +Y A    G+  + M  +  GSMD+LY+GG + +G
Sbjct: 378 IVDFYGAFFVEGSVFICMEYMDAGSMDKLYAGGIKDEG 415


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 536 PSGYGMSSPPRCFPSTMTCPSSNEA 462
           P+ Y  S+PP+  P+T   PSS  +
Sbjct: 220 PATYCPSNPPQLAPATAIAPSSQSS 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,756,282
Number of Sequences: 5004
Number of extensions: 56687
Number of successful extensions: 123
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)