Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0656
         (642 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21319-5|AAL02454.1| 1100|Caenorhabditis elegans Hypothetical pr...    31   0.70 
U21319-4|AAL02455.1| 1097|Caenorhabditis elegans Hypothetical pr...    31   0.70 
Z92831-3|CAC70085.1|  276|Caenorhabditis elegans Hypothetical pr...    31   0.93 
AF016679-1|AAB66162.1|  539|Caenorhabditis elegans Hypothetical ...    31   0.93 
AF036704-3|AAB88559.2|  503|Caenorhabditis elegans Hypothetical ...    30   1.2  
U41545-7|AAK39136.1|  687|Caenorhabditis elegans Hypothetical pr...    28   6.5  
AF003740-1|AAM15561.2|  488|Caenorhabditis elegans Hypothetical ...    28   6.5  
U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p...    27   8.6  
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep...    27   8.6  

>U21319-5|AAL02454.1| 1100|Caenorhabditis elegans Hypothetical
           protein C30G12.6a protein.
          Length = 1100

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +2

Query: 356 DERTAHLMVSGYRRPWTSAMPRAEPSRCLLLNTLHKPRLKKDMS*CSGNTV 508
           +E    ++ +  RR +T    RAEP+   L +  HK   K  M  C  NTV
Sbjct: 95  EEVPLDVLTARIRRVFTEVTYRAEPAAIALFDVAHKIIFKSTMLDCKRNTV 145


>U21319-4|AAL02455.1| 1097|Caenorhabditis elegans Hypothetical
           protein C30G12.6b protein.
          Length = 1097

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +2

Query: 356 DERTAHLMVSGYRRPWTSAMPRAEPSRCLLLNTLHKPRLKKDMS*CSGNTV 508
           +E    ++ +  RR +T    RAEP+   L +  HK   K  M  C  NTV
Sbjct: 95  EEVPLDVLTARIRRVFTEVTYRAEPAAIALFDVAHKIIFKSTMLDCKRNTV 145


>Z92831-3|CAC70085.1|  276|Caenorhabditis elegans Hypothetical
           protein F22G12.6 protein.
          Length = 276

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +2

Query: 389 YRRPWTSAMPRAEPSRCLLLNT--LHKPRLKKDMS*CSGNTVEVSSFHSRMVRGKKDLWK 562
           Y    +S+ P + PSR L L +  L KPR        +GN+++    H  ++  + D WK
Sbjct: 33  YELECSSSTPDSFPSRLLSLTSSLLEKPRFSDVTFKFAGNSLKSVPAHKYVLAARTDFWK 92


>AF016679-1|AAB66162.1|  539|Caenorhabditis elegans Hypothetical
           protein T28C12.5 protein.
          Length = 539

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
 Frame = +2

Query: 398 PWTSAMPRAEPSR-CLLLNTLHKPRLKKDMS*CS---GNTVEVSSFHSRM 535
           PW  A+P A  S  CL LN +  P++++D + C       + V +FH R+
Sbjct: 84  PWDKALPSANQSEDCLYLN-VFAPKIREDKNICKLLVSREIIVVTFHYRL 132


>AF036704-3|AAB88559.2|  503|Caenorhabditis elegans Hypothetical
           protein ZK185.2 protein.
          Length = 503

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 33  FIYLFI*TCGIRIPV*MYVWHHSIRASWAHELDPDD 140
           F   F+  C I++   +Y+    +RA W   +DPD+
Sbjct: 423 FTISFVLVCAIQVTTLLYICQILVRAMWIMRIDPDN 458


>U41545-7|AAK39136.1|  687|Caenorhabditis elegans Hypothetical
           protein C02F12.8 protein.
          Length = 687

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 587 SHXGHPQCISRGLFCHVPSGYGMSSPPRCFPSTMT 483
           S   HPQ +++ +  HVP G    +PP+  P+  T
Sbjct: 158 SGFAHPQIVNQPMHPHVPVGSQNYNPPQFVPAPPT 192


>AF003740-1|AAM15561.2|  488|Caenorhabditis elegans Hypothetical
           protein C41D11.3 protein.
          Length = 488

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = -2

Query: 569 QCISRGLFCHVPSGYGMSSPPRCFPSTMTCP 477
           QC   G+ C V  G   + P  CF  T T P
Sbjct: 313 QCAIDGIHCQVDGGEWPTQPCACFAETCTNP 343


>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
            protein 68 protein.
          Length = 5079

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = -1

Query: 549  FLPRTIRLWNELTSTVFPEHYDMSFFKRGLWRVLSSR 439
            FL   I++  EL +  F EH + +  KRGLW+++++R
Sbjct: 2117 FLVYLIQI-RELLTVQF-EHTEEAILKRGLWKLMNNR 2151


>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
            protein.
          Length = 5071

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = -1

Query: 549  FLPRTIRLWNELTSTVFPEHYDMSFFKRGLWRVLSSR 439
            FL   I++  EL +  F EH + +  KRGLW+++++R
Sbjct: 2238 FLVYLIQI-RELLTVQF-EHTEEAILKRGLWKLMNNR 2272


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,365,307
Number of Sequences: 27780
Number of extensions: 325439
Number of successful extensions: 694
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)