Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0656
         (642 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.3  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    22   5.8  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   7.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   7.7  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -2

Query: 227  KRIRYANPTAGTIS 186
            +R+RYA P+AG IS
Sbjct: 1198 ERLRYAIPSAGDIS 1211


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 184  NEIVPAVGLAYLILFAIIQINILR 255
            N +VP V    +I+ A+I I +LR
Sbjct: 1586 NLVVPVVAAILVIIVAVIVICVLR 1609


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 2/18 (11%)
 Frame = -1

Query: 372 WAVRSSAYK--GNKKKKN 325
           W  +S A +  GNKKKKN
Sbjct: 199 WVYKSKASEEHGNKKKKN 216


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 370 PPDGKWLPSPMDFSNA 417
           PPD  W P  + F+NA
Sbjct: 104 PPDKVWKPDIVLFNNA 119


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 389 YRRPWTSAMPRAEPSR 436
           Y+RP T+  PRA  SR
Sbjct: 159 YKRPRTTFEPRATDSR 174


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,905
Number of Sequences: 438
Number of extensions: 4041
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)