Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0656
         (642 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g08010.1 68416.m00978 expressed protein                             33   0.16 
At2g13680.1 68415.m01508 glycosyl transferase family 48 protein ...    29   2.0  
At5g44005.1 68418.m05385 expressed protein                             28   6.1  
At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical t...    27   8.0  
At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical t...    27   8.0  

>At3g08010.1 68416.m00978 expressed protein
          Length = 374

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = +3

Query: 399 HGLQQCQEQSQAAAYCLILSTSLV*RRTCHSARETPWR*AHSIAGWYVAKKTSG 560
           +GL+ C  ++ ++  CLILS  +  R    + ++TP         W  AKKTSG
Sbjct: 292 NGLEVCSIEADSSKGCLILSVGIATRYVYATYKKTPVT-TDEAEAWESAKKTSG 344


>At2g13680.1 68415.m01508 glycosyl transferase family 48 protein
           contains Pfam profile: PF02364 1,3-beta-glucan synthase
          Length = 1923

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = +3

Query: 237 PNKYLAR*RHSREIKRIKLITYLSLLEHCGFFFFYCLCRQTSVRPT 374
           P  Y+ R  H  +I  IK   +  LL  C F F Y L  +  V+PT
Sbjct: 646 PRIYVGRGMHESQIALIKYTIFWLLLFCCKFAFSYFLQVKLLVKPT 691


>At5g44005.1 68418.m05385 expressed protein
          Length = 94

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +3

Query: 57  CGI-RIPV*MYVWHHSIRASWAHELDPDDIQTDLESLKFPLNLKRNCARGR 206
           CG  R+ V  +VW    R  W+ + D ++IQ   +   + LN     +R R
Sbjct: 44  CGKPRVLVKQFVWRLKSRLRWSRKSDHNNIQCSYDLRSYHLNFDDGWSRRR 94


>At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical to
           protodermal factor 1 [Arabidopsis thaliana]
           gi|4929130|gb|AAD33869
          Length = 306

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 16/38 (42%), Positives = 17/38 (44%)
 Frame = -2

Query: 587 SHXGHPQCISRGLFCHVPSGYGMSSPPRCFPSTMTCPS 474
           S   HP   S     H PSG   SSPP   P  +T PS
Sbjct: 115 STPSHPSTPSHPTPSHPPSGGYYSSPPPRTPVVVTPPS 152


>At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical to
           protodermal factor 1 [Arabidopsis thaliana]
           gi|4929130|gb|AAD33869
          Length = 306

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 16/38 (42%), Positives = 17/38 (44%)
 Frame = -2

Query: 587 SHXGHPQCISRGLFCHVPSGYGMSSPPRCFPSTMTCPS 474
           S   HP   S     H PSG   SSPP   P  +T PS
Sbjct: 115 STPSHPSTPSHPTPSHPPSGGYYSSPPPRTPVVVTPPS 152


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,630,953
Number of Sequences: 28952
Number of extensions: 309377
Number of successful extensions: 670
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)