Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0654
         (621 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    27   0.17 
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    22   4.8  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -3

Query: 619 NNFSIRYXSWNYRGCWHQTC 560
           +NF   +  WNY  CW   C
Sbjct: 747 HNFKGLHLDWNYPVCWQSNC 766



 Score = 23.4 bits (48), Expect = 1.6
 Identities = 8/20 (40%), Positives = 8/20 (40%)
 Frame = -3

Query: 619  NNFSIRYXSWNYRGCWHQTC 560
            NNF      W Y  CW   C
Sbjct: 1935 NNFDGLDLDWEYPKCWQVDC 1954



 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/19 (36%), Positives = 7/19 (36%)
 Frame = -3

Query: 616  NFSIRYXSWNYRGCWHQTC 560
            NF      W Y  CW   C
Sbjct: 1511 NFDGLDLDWEYPKCWQVDC 1529



 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/19 (36%), Positives = 7/19 (36%)
 Frame = -3

Query: 616  NFSIRYXSWNYRGCWHQTC 560
            NF      W Y  CW   C
Sbjct: 2434 NFDGLDLDWEYPKCWQVDC 2452


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -1

Query: 312 RHLKDASPVLDHAICKSYPDSSKLTTSDARP 220
           RH+K A PV+  + C     S++L      P
Sbjct: 68  RHIKGAIPVVSLSTCSMLCGSTQLWPQPTGP 98


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,730
Number of Sequences: 336
Number of extensions: 3113
Number of successful extensions: 10
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15875032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)