Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0654
         (621 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   1e-05
SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   3e-04
SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_1371| Best HMM Match : No HMM Matches (HMM E-Value=.)               39   0.004
SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.046
SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22)                 30   1.7  
SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082)                 30   1.7  
SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)                28   7.0  
SB_33647| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  

>SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 21/24 (87%), Positives = 22/24 (91%)
 Frame = -1

Query: 420 DVVAVSQAPSPESNPDSPLPVTTM 349
           DVVAVSQAPSPESNP+SP PV TM
Sbjct: 105 DVVAVSQAPSPESNPNSPSPVVTM 128


>SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 25/46 (54%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
 Frame = -1

Query: 480 FWSLPPRAGSG*FARLLPSLDVV--AVSQAPSPESNPDSPLPVTTM 349
           FW  P RA     A  +P + +   AVSQAPSPESNP+SP PV TM
Sbjct: 29  FW--PSRARGRIVATRIPHMLLKGRAVSQAPSPESNPNSPSPVVTM 72


>SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 19/27 (70%), Positives = 20/27 (74%)
 Frame = +2

Query: 2   PVVICLSQKLSHACLSASRIKAIPRMA 82
           PVVICLSQ+LSHACLS S      RMA
Sbjct: 135 PVVICLSQRLSHACLSISTCTVKLRMA 161


>SB_1371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 19/27 (70%), Positives = 20/27 (74%)
 Frame = +2

Query: 2   PVVICLSQKLSHACLSASRIKAIPRMA 82
           PVVICLSQ+LSHACLS S      RMA
Sbjct: 111 PVVICLSQRLSHACLSISTRTVKLRMA 137


>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 35.1 bits (77), Expect = 0.046
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = -2

Query: 410 PFLRLPLRNRTLIPRYP 360
           PFLRLPLRNRTLI R+P
Sbjct: 224 PFLRLPLRNRTLILRHP 240


>SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22)
          Length = 1797

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +3

Query: 9   LYACLKN*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 143
           L  CL + A+ ++ +    +Y  W+N+ +LV    L ++  CG+S
Sbjct: 447 LMTCLYDKAVFLTDEEYAAKYGRWVNVQMLVEEPELHFIAKCGSS 491


>SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082)
          Length = 1304

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +3

Query: 9    LYACLKN*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 143
            L  CL + A+ ++ +    +Y  W+N+ +LV    L ++  CG+S
Sbjct: 866  LMTCLYDKAVFLTDEEYAAKYGRWVNVQMLVEEPELHFIAKCGSS 910


>SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
          Length = 441

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 429 PSLDVVAVSQAPSPESNPDSPLP 361
           P+ DV+A  Q P P S  D PLP
Sbjct: 75  PAEDVMAAHQEPKPTSAIDQPLP 97


>SB_33647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 242

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +3

Query: 372 NQGSIPEREPEKRLPHPRKAAGAQIT-HSRHG-EVVTKNNDTGLLRGLVIGMSTL 530
           N+ +IP+RE E R      AAGA I  H +H      K+   G  R L +G   L
Sbjct: 10  NEKTIPQREVE-RTKKAATAAGASIAEHIKHAIAEQVKHAKPGFSRSLTLGQKLL 63


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,253,293
Number of Sequences: 59808
Number of extensions: 414364
Number of successful extensions: 1080
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)