Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0654
         (621 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07020.1 68415.m00803 protein kinase family protein contains ...    30   1.1  
At3g17920.1 68416.m02282 leucine-rich repeat family protein cont...    29   3.3  
At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identica...    29   3.3  
At4g38560.1 68417.m05459 expressed protein                             28   5.7  
At3g08510.1 68416.m00988 phosphoinositide-specific phospholipase...    28   5.7  
At2g25370.1 68415.m03037 zinc finger protein-related contains we...    28   5.7  
At1g14270.1 68414.m01692 CAAX amino terminal protease family pro...    27   7.6  

>At2g07020.1 68415.m00803 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 255 DSSKLTTSDARPSVDWF*SNKSTHPITGQSSD 160
           DS     S  RPS+DWF  N+S +  +  SS+
Sbjct: 223 DSDLSFVSSDRPSMDWFEDNRSNYATSSSSSE 254


>At3g17920.1 68416.m02282 leucine-rich repeat family protein
           contains leucine rich repeat (LRR) domains, Pfam:PF00560
          Length = 962

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -1

Query: 438 RLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVAE 337
           RLLPSL VV+   +P+ +  P S LP + + V E
Sbjct: 84  RLLPSLKVVSSLPSPARDPTPLSLLPFSKLKVLE 117


>At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identical
           to gi_3883128_gb_AAC77827
          Length = 133

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 429 PSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES 322
           PS    A + APSP +NP    P T   V++   ES
Sbjct: 39  PSQSPRATAPAPSPSANPPPSAPTTAPPVSQPPTES 74


>At4g38560.1 68417.m05459 expressed protein
          Length = 521

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +1

Query: 7   SYMLVSKIKPCMSQCKPY*GDTANGSIYQFWFLRSYSVTWITVVILEL 150
           SY + + +   + +     GD A+GS  Q    +SYS+  +  V+LEL
Sbjct: 341 SYKVRASVSSTLQKILDKHGDIASGSKLQSLRTKSYSLETLAAVVLEL 388


>At3g08510.1 68416.m00988 phosphoinositide-specific phospholipase C
           (PLC2) identical to phosphoinositide specific
           phospholipase C(AtPLC2) GI:857374 [Arabidopsis thaliana]
          Length = 581

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/54 (24%), Positives = 26/54 (48%)
 Frame = -1

Query: 369 PLPVTTMVVAETTIES**GRHLKDASPVLDHAICKSYPDSSKLTTSDARPSVDW 208
           P  V  + ++E  +E    ++ K       H + + YP  +++T+S+  P V W
Sbjct: 339 PDKVRRLSLSEEQLEKAAEKYAKQIVRFTQHNLLRIYPKGTRVTSSNYNPLVGW 392


>At2g25370.1 68415.m03037 zinc finger protein-related contains weak
           similarity to zinc fingers and Pfam:PF01485 IBR domain
          Length = 603

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 516 RLRGLVRVPYRYFWSLPPR 460
           +LR L+   YRYFWSL  R
Sbjct: 84  KLRSLIAGDYRYFWSLNQR 102


>At1g14270.1 68414.m01692 CAAX amino terminal protease family
           protein contains Pfam profile PF02517: CAAX amino
           terminal protease family
          Length = 353

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 5   VVICLSQKLSHACLSASRIKAIPRMAQY 88
           ++ CLSQ  S  CLS SR   +P+   Y
Sbjct: 18  IISCLSQSSSLLCLSDSRRLILPKTCTY 45


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,375,462
Number of Sequences: 28952
Number of extensions: 286493
Number of successful extensions: 679
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)