Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0653
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    28   1.3  
SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|...    26   5.4  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   5.4  
SPCC330.03c |||NADPH-hemoprotein reductase|Schizosaccharomyces p...    25   7.2  

>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = -2

Query: 345 NRPSPG**TQ*D*TDV*TSASENQVSLGSKSARSSSVIWEIS*RTQDGTKIS 190
           N P PG  T    ++V ++ SEN    GSKS  SSS++   +  T   T I+
Sbjct: 49  NGPVPGTTTIYPTSNVASNTSENYPYTGSKSLSSSSILSNSTISTSSSTPIT 100


>SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 570

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 548 LTDSKQLSPLLCNQPPSFGWLIYPQLLLL 634
           + D+K+L PL   Q     W +Y  LLL+
Sbjct: 77  MQDAKKLDPLTPKQESKLKWKLYIYLLLM 105


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -3

Query: 284  LKTKFPSAQKAQ--GAPQSSGKSHDEPKTAPKSAAE 183
            L+ K  +A++ Q    P++  K H EPK+A    AE
Sbjct: 1408 LRAKLKAAERLQKPAIPRTRRKGHTEPKSAKSLLAE 1443


>SPCC330.03c |||NADPH-hemoprotein reductase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 145

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
 Frame = +2

Query: 206 SWVRHEISQMTEELLALFEPRETWFSDAEVQTSVQSYCVYYP-GEGRLFSHLLSSSA*RR 382
           S V   IS   EEL     P + W +      +V +Y  Y+P G  ++  H   S     
Sbjct: 64  SGVESPISVTAEELAKHCSPDDCWMAIRGKVYNVTAYLPYHPVGPKKILKH---SGV--- 117

Query: 383 NESGPPKRHHD-VIWSEILK 439
           + + P  +HHD V   E+LK
Sbjct: 118 DATKPYLKHHDWVNEEELLK 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,733,123
Number of Sequences: 5004
Number of extensions: 55081
Number of successful extensions: 142
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)