BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ceN-0653 (652 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 28 1.3 SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|... 26 5.4 SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 5.4 SPCC330.03c |||NADPH-hemoprotein reductase|Schizosaccharomyces p... 25 7.2 >SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual Length = 358 Score = 27.9 bits (59), Expect = 1.3 Identities = 19/52 (36%), Positives = 27/52 (51%) Frame = -2 Query: 345 NRPSPG**TQ*D*TDV*TSASENQVSLGSKSARSSSVIWEIS*RTQDGTKIS 190 N P PG T ++V ++ SEN GSKS SSS++ + T T I+ Sbjct: 49 NGPVPGTTTIYPTSNVASNTSENYPYTGSKSLSSSSILSNSTISTSSSTPIT 100 >SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr 3|||Manual Length = 570 Score = 25.8 bits (54), Expect = 5.4 Identities = 11/29 (37%), Positives = 16/29 (55%) Frame = +2 Query: 548 LTDSKQLSPLLCNQPPSFGWLIYPQLLLL 634 + D+K+L PL Q W +Y LLL+ Sbjct: 77 MQDAKKLDPLTPKQESKLKWKLYIYLLLM 105 >SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||Manual Length = 1461 Score = 25.8 bits (54), Expect = 5.4 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%) Frame = -3 Query: 284 LKTKFPSAQKAQ--GAPQSSGKSHDEPKTAPKSAAE 183 L+ K +A++ Q P++ K H EPK+A AE Sbjct: 1408 LRAKLKAAERLQKPAIPRTRRKGHTEPKSAKSLLAE 1443 >SPCC330.03c |||NADPH-hemoprotein reductase|Schizosaccharomyces pombe|chr 3|||Manual Length = 145 Score = 25.4 bits (53), Expect = 7.2 Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 2/80 (2%) Frame = +2 Query: 206 SWVRHEISQMTEELLALFEPRETWFSDAEVQTSVQSYCVYYP-GEGRLFSHLLSSSA*RR 382 S V IS EEL P + W + +V +Y Y+P G ++ H S Sbjct: 64 SGVESPISVTAEELAKHCSPDDCWMAIRGKVYNVTAYLPYHPVGPKKILKH---SGV--- 117 Query: 383 NESGPPKRHHD-VIWSEILK 439 + + P +HHD V E+LK Sbjct: 118 DATKPYLKHHDWVNEEELLK 137 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,733,123 Number of Sequences: 5004 Number of extensions: 55081 Number of successful extensions: 142 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 139 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 142 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 293780908 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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