Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0653
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0514 - 25816808-25817318,25817865-25817994,25818083-25818215 31 0.80
05_05_0297 - 23921648-23921758,23922011-23922089,23922774-239228... 30 1.4
03_06_0316 + 33091194-33091370,33091451-33092155 29 2.4
02_05_1044 + 33728623-33728768,33728814-33728993,33729446-337295... 29 2.4
04_04_1271 - 32282865-32283167,32283429-32283561,32283683-322839... 28 5.6
06_03_0613 + 22748223-22749513,22750046-22750179,22751066-227513... 28 7.4
05_03_0035 - 7592177-7592938 28 7.4
05_03_0033 - 7585267-7586028 27 9.8
>04_04_0514 - 25816808-25817318,25817865-25817994,25818083-25818215
Length = 257
Score = 31.1 bits (67), Expect = 0.80
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = -3
Query: 347 IIVLLPDNKRSKIEQMFELQHLKTKFPSAQKAQGAPQSSGKSHDEPKTAPKSAA 186
I LP ++I+ ++ HLK + + + S GK H +PK+A K AA
Sbjct: 92 IAARLPGRTDNEIKNVWHT-HLKKRLDAPAQGGHVAASGGKKHKKPKSAKKPAA 144
>05_05_0297 -
23921648-23921758,23922011-23922089,23922774-23922822,
23923180-23923255,23923693-23923767,23923862-23923992,
23924830-23924935
Length = 208
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -3
Query: 332 PDNKRSKIEQMFELQHLKTKFPS-AQKAQGAPQSSGKSHDEPKTAPKSAAEREI 174
P ++SK E +LQ ++ PS AQ+A G P+ K + P + A REI
Sbjct: 7 PAVRKSKAEPKKKLQFERSPRPSKAQRAGGTPRQQTKQRKPHRFRPGTVALREI 60
>03_06_0316 + 33091194-33091370,33091451-33092155
Length = 293
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = -3
Query: 338 LLPDNKRSKIEQMFELQHLKTKFPSAQKAQGAPQSSGKSHDEPKTA--PKSAAE 183
L+ K +K++ ++L T+ P+A K + P ++ K +PK A PK+AA+
Sbjct: 106 LVAAGKLTKVKNSYKLP--PTRAPAAAKPKAKPAAAAKPKPKPKAAAKPKAAAK 157
>02_05_1044 +
33728623-33728768,33728814-33728993,33729446-33729523,
33729834-33729930,33730206-33730339,33730944-33731025,
33731631-33731717,33731875-33731981,33732674-33732845,
33733018-33733259,33733482-33733563,33733954-33734019,
33734040-33734159,33734935-33735012,33735083-33735178,
33735791-33735897,33736031-33736199,33736402-33736452,
33736567-33736650,33736946-33737040,33737175-33737265,
33737342-33737488,33737614-33737676
Length = 857
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Frame = -3
Query: 485 EVWKNKTLLKGSRVIISEFLTKSRHDVFLEA--RSHFGVKRCWTTDGKIIVLLPDNKRSK 312
E+WKN K + F RHD L + G + T+D +V + +S
Sbjct: 364 ELWKNGLPEKEQKYATGFFTVIKRHDALLPSILAQSDGSNQTKTSDDLFVVPYSEEYKSS 423
Query: 311 IEQMFELQH 285
+E+ EL H
Sbjct: 424 LEKAAELLH 432
>04_04_1271 -
32282865-32283167,32283429-32283561,32283683-32283908,
32284058-32284274,32284398-32284558,32285309-32285449,
32285621-32286944
Length = 834
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +1
Query: 262 AEGNLVFRC*SSNICSILLRLLSGRRTIIFPSVVQQ 369
A+GNL +C + +LL ++SG+R P+ +++
Sbjct: 699 AQGNLTLKCDVYSFGVVLLEIISGKRNRTLPTFLRE 734
>06_03_0613 +
22748223-22749513,22750046-22750179,22751066-22751309,
22751401-22751609,22751691-22751740,22751933-22752053,
22752138-22752383
Length = 764
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/55 (27%), Positives = 30/55 (54%)
Frame = -2
Query: 261 SKSARSSSVIWEIS*RTQDGTKISGRARNRXXDDSSKVVWRYLELIHRCNTKNLV 97
S +SS V+ + + QDG+++S R S + + +Y+E+I + ++LV
Sbjct: 465 SNLIKSSPVVKHYNGQLQDGSRVSLRCLKLKPKYSPQSLTQYMEIISKLRHRHLV 519
>05_03_0035 - 7592177-7592938
Length = 253
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = -3
Query: 281 KTKFPSAQKAQGAPQ--SSGKSHDEPKTAPKSAAERE 177
KT+ S KA+ P+ S KS EP++ P++ AER+
Sbjct: 194 KTEPKSESKAEPKPERKSYSKSKPEPESKPEAKAERQ 230
>05_03_0033 - 7585267-7586028
Length = 253
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = -3
Query: 281 KTKFPSAQKAQGAPQSSGK--SHDEPKTAPKSAAERE 177
K++ S K++ PQ+ K S EPKT PKS ++ E
Sbjct: 168 KSEPKSEPKSEPTPQTEPKAESQPEPKTEPKSESKAE 204
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,374,236
Number of Sequences: 37544
Number of extensions: 352774
Number of successful extensions: 889
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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