Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0653
(652 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57207| Best HMM Match : Transposase_22 (HMM E-Value=0.17) 44 1e-04
SB_53000| Best HMM Match : Transposase_22 (HMM E-Value=0.026) 44 1e-04
SB_6319| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_44235| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.050
SB_31647| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.12
SB_23541| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.62
SB_45202| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.81
SB_41384| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_39979| Best HMM Match : RVT_1 (HMM E-Value=4.6e-12) 30 1.9
SB_57452| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_936| Best HMM Match : DUF1127 (HMM E-Value=3.2) 30 1.9
SB_48988| Best HMM Match : DUF1127 (HMM E-Value=1.5) 29 2.5
SB_2704| Best HMM Match : TP2 (HMM E-Value=6.9) 29 2.5
SB_5898| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_18971| Best HMM Match : PWP2 (HMM E-Value=4) 29 3.3
SB_1330| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.9) 29 4.3
SB_59010| Best HMM Match : rve (HMM E-Value=0.0052) 28 5.7
SB_48252| Best HMM Match : Ribosomal_60s (HMM E-Value=1.1) 28 5.7
SB_27943| Best HMM Match : Pox_A32 (HMM E-Value=0.047) 28 5.7
SB_9870| Best HMM Match : GspM (HMM E-Value=1.9) 28 5.7
SB_4563| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_39791| Best HMM Match : RVT_1 (HMM E-Value=0.083) 28 7.6
SB_22222| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_5507| Best HMM Match : TP2 (HMM E-Value=4) 28 7.6
SB_6427| Best HMM Match : RBM1CTR (HMM E-Value=0.42) 28 7.6
>SB_57207| Best HMM Match : Transposase_22 (HMM E-Value=0.17)
Length = 262
Score = 44.0 bits (99), Expect = 1e-04
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
Frame = -3
Query: 572 DLTACYRLG-SNTNKPRPILVRFLSLRRCNEVWKNKTLL--KGSRVIISEFLTKSRHDVF 402
D+ +R+G S + PR I+ +F+ ++ K K L K ++ ++E LTK R D
Sbjct: 152 DIWRSHRVGHSKGSTPRQIICKFVRHNIKAKILKEKKSLREKKDKLRVNEDLTKGRLDAI 211
Query: 401 LEARSHFGVKRCWTTDGKIIVLLPDNKRSKIEQMFELQHLK 279
S + + WT DG I V L +K E + L+ LK
Sbjct: 212 KAINSKLDIYKLWTIDGTIHVRLNKDKDKAKEIIHSLRQLK 252
>SB_53000| Best HMM Match : Transposase_22 (HMM E-Value=0.026)
Length = 301
Score = 43.6 bits (98), Expect = 1e-04
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
Frame = -3
Query: 572 DLTACYRLG-SNTNKPRPILVRFLSLRRCNEVWKNKTLL--KGSRVIISEFLTKSRHDVF 402
D+ +R+G + + PR I+ +F+ ++ K K L K ++ ++E LTK R D
Sbjct: 191 DICRSHRVGQAKGSNPRQIICKFVRHNIKAKILKEKKSLREKKEKLRVNEDLTKGRLDAI 250
Query: 401 LEARSHFGVKRCWTTDGKIIVLLPDNKRSKIEQMFELQHLK 279
S + + WT DG I V L +K E + L+ LK
Sbjct: 251 KAINSKLDIYKLWTIDGTIHVRLNKDKDKAKEIIHSLRQLK 291
>SB_6319| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/76 (27%), Positives = 38/76 (50%)
Frame = -3
Query: 647 DATDPATAIVGILTNQMKVAGCTEEDLTACYRLGSNTNKPRPILVRFLSLRRCNEVWKNK 468
D +P +V + +MK+ +L +R+G++ RP++ +FL + V KN
Sbjct: 42 DGENPHEVLVNTMKVEMKLQNVDAVELERVHRIGNSKTSSRPLVAKFLRFQDRERVGKNA 101
Query: 467 TLLKGSRVIISEFLTK 420
LKG+ + I+E K
Sbjct: 102 HALKGTNIGIAEQFPK 117
>SB_44235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 160
Score = 35.1 bits (77), Expect = 0.050
Identities = 19/73 (26%), Positives = 34/73 (46%)
Frame = -3
Query: 638 DPATAIVGILTNQMKVAGCTEEDLTACYRLGSNTNKPRPILVRFLSLRRCNEVWKNKTLL 459
+P +V + +MK+ +L R+ + RP++ +FL + V KN L
Sbjct: 48 NPHEVLVNTMIVEMKLQNVDAIELERVNRIANRKTSSRPLVAKFLRFQDRERVRKNAHAL 107
Query: 458 KGSRVIISEFLTK 420
KG+ + I+E K
Sbjct: 108 KGTNIGIAEQFPK 120
>SB_31647| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 33.9 bits (74), Expect = 0.12
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Frame = -3
Query: 461 LKGSRVIISEFLTKSRHDVF---LEARSHFGVKRCWTTDGKIIVLLPDNKRSKIEQMFEL 291
L + + ISE LT + +F L + F K WT GK VL+ ++ S Q+ L
Sbjct: 297 LADNSIYISESLTANNKAIFKGALSFKKEFRFKFIWTVHGK--VLIRKDEHSPAIQIKSL 354
Query: 290 QHLKTKFPSAQKAQGAPQSS 231
QHL + Q APQ S
Sbjct: 355 QHL----ADLRSEQAAPQQS 370
>SB_23541| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 957
Score = 31.5 bits (68), Expect = 0.62
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -3
Query: 305 QMFELQHLKTKFPSAQKAQGAPQSSGKSHDEPKTAPKSA 189
+M E Q + P Q AQG Q GK H EP P +A
Sbjct: 749 EMEEHQGSTSAQPDEQLAQGLAQEPGKQHQEPARTPVAA 787
>SB_45202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 380
Score = 31.1 bits (67), Expect = 0.81
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Frame = -3
Query: 452 SRVIISEFLTKSRHDVF---LEARSHFGVKRCWTTDGKIIVLL-PDNKRSKIEQMFELQH 285
+++ ISE L+ ++F L AR K WT +GK+ + D++ I + +L H
Sbjct: 123 NKIYISESLSPGNRELFKAALSARHDLKFKYIWTQNGKVFLRKNNDSQAVLISKSQDLLH 182
Query: 284 LKTKFP-SAQKAQGAPQSSGKSHD 216
LK + +Q+ + A + K+ D
Sbjct: 183 LKQREDHHSQEVESANLTGTKAFD 206
>SB_41384| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 335
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -2
Query: 648 RCHRPSNSNC--GYINQPNEGGWLHRRGLNCLLSV 550
R H PS + G+ ++PN G W+ R C+L V
Sbjct: 106 RGHGPSGNRSAPGHFDRPNNGSWIQRGPPKCILHV 140
>SB_39979| Best HMM Match : RVT_1 (HMM E-Value=4.6e-12)
Length = 792
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = -3
Query: 452 SRVIISEFLTKSRHDVF---LEARSHFGVKRCWTTDGKIIVLL-PDNKRSKIEQMFELQH 285
+++ ISE L+ ++F L AR K WT +GK+ + D++ I + +L H
Sbjct: 123 NKIYISESLSPGNRELFKAALSARHDLKFKYIWTQNGKVFLRKNNDSQAVLISKSQDLLH 182
Query: 284 LKTK 273
LK +
Sbjct: 183 LKQR 186
>SB_57452| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 106
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = -3
Query: 452 SRVIISEFLTKSRHDVF---LEARSHFGVKRCWTTDGKIIVLL-PDNKRSKIEQMFELQH 285
+++ ISE L+ ++F L AR K WT +GK+ + D++ I + +L H
Sbjct: 27 NKIYISESLSPGNRELFKAELSARHDLKFKYIWTQNGKVFLRKNNDSQAVLISKSQDLLH 86
Query: 284 LKTK 273
LK +
Sbjct: 87 LKQR 90
>SB_936| Best HMM Match : DUF1127 (HMM E-Value=3.2)
Length = 280
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = -3
Query: 452 SRVIISEFLTKSRHDVF---LEARSHFGVKRCWTTDGKIIVLL-PDNKRSKIEQMFELQH 285
+++ ISE L+ ++F L AR K WT +GK+ + D++ I + +L H
Sbjct: 201 NKIYISESLSPGNRELFKAALSARHDLKFKYIWTQNGKVFLRKNNDSQAVLISKSQDLLH 260
Query: 284 LKTK 273
LK +
Sbjct: 261 LKQR 264
>SB_48988| Best HMM Match : DUF1127 (HMM E-Value=1.5)
Length = 270
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Frame = -3
Query: 452 SRVIISEFLTKSRHDVF---LEARSHFGVKRCWTTDGKIIVLL-PDNKRSKIEQMFELQH 285
+++ ISE L+ ++F L AR K WT +GK+ + D + I + +L H
Sbjct: 191 NKIYISESLSPGNRELFKAALSARHDLKFKYIWTQNGKVFLRKNNDGQAVLISKSQDLLH 250
Query: 284 LKTK 273
LK +
Sbjct: 251 LKQR 254
>SB_2704| Best HMM Match : TP2 (HMM E-Value=6.9)
Length = 351
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = -3
Query: 305 QMFELQHLKTKFPSAQKAQGAPQSSGKSHDEPKTAPKSAA 186
+M E Q + P Q AQ Q GK H EP P +AA
Sbjct: 178 EMEEPQGSTSAQPDEQFAQELAQEPGKQHQEPARTPVAAA 217
>SB_5898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1109
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = -3
Query: 305 QMFELQHLKTKFPSAQKAQGAPQSSGKSHDEPKTAPKSA 189
QM E Q + P Q AQ Q GK H EP P +A
Sbjct: 739 QMGEPQGSTSAQPDEQLAQELAQEPGKQHQEPARTPVAA 777
>SB_18971| Best HMM Match : PWP2 (HMM E-Value=4)
Length = 400
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -3
Query: 578 EEDLTACYRLGS-NTNKPRPILVRFLSLRRCNEVWKNKTLLKGSRV 444
EED++ + L S N N P I+V+F+ N + N+ L G +V
Sbjct: 59 EEDISTSHPLPSYNPNAPPKIIVKFVRRDTRNAFYSNRRKLAGMKV 104
>SB_1330| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.9)
Length = 482
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = -3
Query: 305 QMFELQHLKTKFPSAQKAQGAPQSSGKSHDEPKTAPKSAAEREI 174
+M E Q + P Q AQ Q GK H EP P +A I
Sbjct: 71 EMEEPQGSTSAQPDEQLAQELAQEPGKRHQEPARTPVAAGPARI 114
>SB_59010| Best HMM Match : rve (HMM E-Value=0.0052)
Length = 935
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -3
Query: 305 QMFELQHLKTKFPSAQKAQGAPQSSGKSHDEPKTAPKSA 189
+M E Q + P Q AQ Q GK H EP P +A
Sbjct: 554 EMGEPQGSTSAQPDEQLAQELAQEPGKQHQEPARTPVAA 592
>SB_48252| Best HMM Match : Ribosomal_60s (HMM E-Value=1.1)
Length = 937
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = -3
Query: 332 PDNKRSKIEQMFELQHLKTKFPSAQKAQGAPQSSGKSHDEPKTAPKSAAER 180
P ++ QM E Q + P+ A+ Q++ + H EP P + AER
Sbjct: 632 PCSRHRVSTQMEEPQGSTSAQPAGTSAEPDKQAADEHHQEPARTPSALAER 682
>SB_27943| Best HMM Match : Pox_A32 (HMM E-Value=0.047)
Length = 983
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -3
Query: 305 QMFELQHLKTKFPSAQKAQGAPQSSGKSHDEPKTAPKSA 189
+M E Q + P Q AQ Q GK H EP P +A
Sbjct: 682 RMEEPQGSTSARPDEQPAQELAQEPGKQHQEPARTPVAA 720
>SB_9870| Best HMM Match : GspM (HMM E-Value=1.9)
Length = 522
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -3
Query: 305 QMFELQHLKTKFPSAQKAQGAPQSSGKSHDEPKTAPKSA 189
+M E Q + P Q AQ Q GK H EP P +A
Sbjct: 138 RMEEPQGSTSARPDEQPAQELAQEPGKQHQEPARTPVAA 176
>SB_4563| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1473
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -3
Query: 305 QMFELQHLKTKFPSAQKAQGAPQSSGKSHDEPKTAPKSA 189
+M E Q + P Q AQ Q GK H EP P +A
Sbjct: 985 EMGEPQGSTSAQPDEQLAQELAQEPGKQHQEPARTPVAA 1023
>SB_39791| Best HMM Match : RVT_1 (HMM E-Value=0.083)
Length = 497
Score = 27.9 bits (59), Expect = 7.6
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Frame = -3
Query: 452 SRVIISEFLTKSRHDVF---LEARSHFGVKRCWTTDGKIIVLL-PDNKRSKIEQMFELQH 285
+++ ISE L+ ++F L AR K WT +GK+ + D++ I + + H
Sbjct: 150 NKIYISESLSPGNRELFKAALSARHDLKFKYIWTQNGKVFLRKNKDSQAVLISKSQDSLH 209
Query: 284 LKTK 273
LK +
Sbjct: 210 LKQR 213
>SB_22222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 162
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = -3
Query: 623 IVGILTNQMKVAGCTEEDLTACYRLGS--NTNKPRPILVRFLSLRRCNEVWKNKTLLKGS 450
I+ L +++ + D A +RLG + KPRPI+ RF S + + ++ K L GS
Sbjct: 42 IIRDLLHELGFSNPQNIDFHAVHRLGKPRDGGKPRPIIARFNSRQDRDLDFRKKRKLVGS 101
>SB_5507| Best HMM Match : TP2 (HMM E-Value=4)
Length = 524
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -3
Query: 305 QMFELQHLKTKFPSAQKAQGAPQSSGKSHDEPKTAPKSA 189
+M E Q + P Q AQ Q GK H EP P +A
Sbjct: 180 EMGEPQGSTSARPDKQLAQELAQEPGKQHQEPAHTPVAA 218
>SB_6427| Best HMM Match : RBM1CTR (HMM E-Value=0.42)
Length = 315
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -3
Query: 305 QMFELQHLKTKFPSAQKAQGAPQSSGKSHDEPKTAPKSA 189
+M E Q + P Q AQ Q GK H EP P +A
Sbjct: 114 EMEEPQGSTSAQPDDQLAQELAQEPGKQHQEPARTPVAA 152
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,901,554
Number of Sequences: 59808
Number of extensions: 402981
Number of successful extensions: 1233
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1233
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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