Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0653
         (652 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071422-1|AAL49044.1|  318|Drosophila melanogaster RE50056p pro...    30   3.1  
AE014298-1937|AAF48299.1|  340|Drosophila melanogaster CG11164-P...    30   3.1  
AE014134-630|AAF51090.1|  807|Drosophila melanogaster CG15415-PA...    29   5.5  
BT012478-1|AAS93749.1|  341|Drosophila melanogaster RE15368p pro...    28   9.6  
BT001612-1|AAN71367.1|  460|Drosophila melanogaster RE32823p pro...    28   9.6  
AF148814-1|AAF26671.1|  431|Drosophila melanogaster translation ...    28   9.6  
AF148813-1|AAF26670.1|  360|Drosophila melanogaster translation ...    28   9.6  
AE014297-4355|AAN14165.1|  431|Drosophila melanogaster CG11901-P...    28   9.6  
AE014297-4354|AAF56877.2|  431|Drosophila melanogaster CG11901-P...    28   9.6  

>AY071422-1|AAL49044.1|  318|Drosophila melanogaster RE50056p
           protein.
          Length = 318

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +2

Query: 209 WVRHEISQMTEELLALFEPRETWFSDAEVQTSVQSY 316
           ++ H   +M E L+A  EPR +WF D+EV ++ + Y
Sbjct: 43  FITHPDGRMME-LVAFTEPRRSWFVDSEVCSNGRIY 77


>AE014298-1937|AAF48299.1|  340|Drosophila melanogaster CG11164-PA
           protein.
          Length = 340

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +2

Query: 209 WVRHEISQMTEELLALFEPRETWFSDAEVQTSVQSY 316
           ++ H   +M E L+A  EPR +WF D+EV ++ + Y
Sbjct: 65  FITHPDGRMME-LVAFTEPRRSWFVDSEVCSNGRIY 99


>AE014134-630|AAF51090.1|  807|Drosophila melanogaster CG15415-PA
           protein.
          Length = 807

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 284 LKTKFPS-AQKAQGAPQSSGKSHDEPKTAPKSAAE 183
           LKT  P     A  +P SS + H  P+T+ KSAAE
Sbjct: 448 LKTALPRIVSVAAQSPSSSAQLHTHPETSLKSAAE 482


>BT012478-1|AAS93749.1|  341|Drosophila melanogaster RE15368p
           protein.
          Length = 341

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 14/120 (11%)
 Frame = -3

Query: 500 LRRCNEVWKNKTLLKGSRVIISEFLTKSR----HDVFLE--ARSHFG-VKRCWTT---DG 351
           L++ N+  ++ T L G R+ +++ +  S     ++  LE   RS FG V R + T     
Sbjct: 155 LQQLNQKLQDATFLAGERITLADIVVFSSLLHLYEYVLEPSVRSAFGNVNRWFVTILNQK 214

Query: 350 KIIVLLPDNKRSKIEQMFELQ---HLKTKFPSAQKAQGAPQSSG-KSHDEPKTAPKSAAE 183
           ++  ++ D K  +   +F+ +     + K  +A+  Q A Q    K   E K APK AAE
Sbjct: 215 QVQAVVKDYKLCEKALVFDPKKYAEFQAKTGAAKPQQQAQQQKQEKKPKEKKEAPKKAAE 274


>BT001612-1|AAN71367.1|  460|Drosophila melanogaster RE32823p
           protein.
          Length = 460

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 14/120 (11%)
 Frame = -3

Query: 500 LRRCNEVWKNKTLLKGSRVIISEFLTKSR----HDVFLE--ARSHFG-VKRCWTT---DG 351
           L++ N+  ++ T L G R+ +++ +  S     ++  LE   RS FG V R + T     
Sbjct: 164 LQQLNQKLQDATFLAGERITLADIVVFSSLLHLYEYVLEPSVRSAFGNVNRWFVTILNQK 223

Query: 350 KIIVLLPDNKRSKIEQMFELQ---HLKTKFPSAQKAQGAPQSSG-KSHDEPKTAPKSAAE 183
           ++  ++ D K  +   +F+ +     + K  +A+  Q A Q    K   E K APK AAE
Sbjct: 224 QVQAVVKDYKLCEKALVFDPKKYAEFQAKTGAAKPQQQAQQQKQEKKPKEKKEAPKKAAE 283


>AF148814-1|AAF26671.1|  431|Drosophila melanogaster translation
           elongation factor1 gamma protein.
          Length = 431

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 14/120 (11%)
 Frame = -3

Query: 500 LRRCNEVWKNKTLLKGSRVIISEFLTKSR----HDVFLE--ARSHFG-VKRCWTT---DG 351
           L++ N+  ++ T L G R+ +++ +  S     ++  LE   RS FG V R + T     
Sbjct: 135 LQQLNQKLQDATFLAGERITLADIVVFSSLLHLYEYVLEPSVRSAFGNVNRWFVTILNQK 194

Query: 350 KIIVLLPDNKRSKIEQMFELQ---HLKTKFPSAQKAQGAPQSSG-KSHDEPKTAPKSAAE 183
           ++  ++ D K  +   +F+ +     + K  +A+  Q A Q    K   E K APK AAE
Sbjct: 195 QVQAVVKDYKLCEKALVFDPKKYAEFQAKTGAAKPQQQAQQQKQEKKPKEKKEAPKKAAE 254


>AF148813-1|AAF26670.1|  360|Drosophila melanogaster translation
           elongation factor1 gamma protein.
          Length = 360

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 14/120 (11%)
 Frame = -3

Query: 500 LRRCNEVWKNKTLLKGSRVIISEFLTKSR----HDVFLE--ARSHFG-VKRCWTT---DG 351
           L++ N+  ++ T L G R+ +++ +  S     ++  LE   RS FG V R + T     
Sbjct: 64  LQQLNQKLQDATFLAGERITLADIVVFSSLLHLYEYVLEPSVRSAFGNVNRWFVTILNQK 123

Query: 350 KIIVLLPDNKRSKIEQMFELQ---HLKTKFPSAQKAQGAPQSSG-KSHDEPKTAPKSAAE 183
           ++  ++ D K  +   +F+ +     + K  +A+  Q A Q    K   E K APK AAE
Sbjct: 124 QVQAVVKDYKLCEKALVFDPKKYAEFQAKTGAAKPQQQAQQQKQEKKPKEKKEAPKKAAE 183


>AE014297-4355|AAN14165.1|  431|Drosophila melanogaster CG11901-PB,
           isoform B protein.
          Length = 431

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 14/120 (11%)
 Frame = -3

Query: 500 LRRCNEVWKNKTLLKGSRVIISEFLTKSR----HDVFLE--ARSHFG-VKRCWTT---DG 351
           L++ N+  ++ T L G R+ +++ +  S     ++  LE   RS FG V R + T     
Sbjct: 135 LQQLNQKLQDATFLAGERITLADIVVFSSLLHLYEYVLEPSVRSAFGNVNRWFVTILNQK 194

Query: 350 KIIVLLPDNKRSKIEQMFELQ---HLKTKFPSAQKAQGAPQSSG-KSHDEPKTAPKSAAE 183
           ++  ++ D K  +   +F+ +     + K  +A+  Q A Q    K   E K APK AAE
Sbjct: 195 QVQAVVKDYKLCEKALVFDPKKYAEFQAKTGAAKPQQQAQQQKQEKKPKEKKEAPKKAAE 254


>AE014297-4354|AAF56877.2|  431|Drosophila melanogaster CG11901-PA,
           isoform A protein.
          Length = 431

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 14/120 (11%)
 Frame = -3

Query: 500 LRRCNEVWKNKTLLKGSRVIISEFLTKSR----HDVFLE--ARSHFG-VKRCWTT---DG 351
           L++ N+  ++ T L G R+ +++ +  S     ++  LE   RS FG V R + T     
Sbjct: 135 LQQLNQKLQDATFLAGERITLADIVVFSSLLHLYEYVLEPSVRSAFGNVNRWFVTILNQK 194

Query: 350 KIIVLLPDNKRSKIEQMFELQ---HLKTKFPSAQKAQGAPQSSG-KSHDEPKTAPKSAAE 183
           ++  ++ D K  +   +F+ +     + K  +A+  Q A Q    K   E K APK AAE
Sbjct: 195 QVQAVVKDYKLCEKALVFDPKKYAEFQAKTGAAKPQQQAQQQKQEKKPKEKKEAPKKAAE 254


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,551,647
Number of Sequences: 53049
Number of extensions: 608147
Number of successful extensions: 1699
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1691
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2765538900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)