Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0653
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric ...    29   2.2  
AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric ...    29   2.2  
Z29560-2|CAA82662.1| 1131|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AF120269-1|AAD13795.1| 1131|Caenorhabditis elegans sex determina...    27   8.7  
AC024817-40|AAF59577.4|  967|Caenorhabditis elegans Hypothetical...    27   8.7  
AC024794-1|AAK68497.1|  994|Caenorhabditis elegans Hypothetical ...    27   8.7  

>AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric
            chromosome bindingprotein protein 6, isoform a protein.
          Length = 1724

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = -3

Query: 470  KTLLKGSRVIISEFLTKSRHDVFLEARSHFGVKR-CWTTDGKIIVLLPDNKRSKIEQMFE 294
            KT++  S + + EFL + R    L+ +    ++  C      I  +L DN++ K E MFE
Sbjct: 1294 KTIVP-SILSLREFLNQHRSP--LQRKCLLAIRMICIEHKNDIDEILQDNRQLKDEMMFE 1350

Query: 293  LQHLKTKFPSAQK 255
            LQ +K +   A +
Sbjct: 1351 LQRVKQRTEEANR 1363


>AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric
            chromosome bindingprotein protein 6, isoform b protein.
          Length = 1758

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = -3

Query: 470  KTLLKGSRVIISEFLTKSRHDVFLEARSHFGVKR-CWTTDGKIIVLLPDNKRSKIEQMFE 294
            KT++  S + + EFL + R    L+ +    ++  C      I  +L DN++ K E MFE
Sbjct: 1294 KTIVP-SILSLREFLNQHRSP--LQRKCLLAIRMICIEHKNDIDEILQDNRQLKDEMMFE 1350

Query: 293  LQHLKTKFPSAQK 255
            LQ +K +   A +
Sbjct: 1351 LQRVKQRTEEANR 1363


>Z29560-2|CAA82662.1| 1131|Caenorhabditis elegans Hypothetical
           protein K03H1.2 protein.
          Length = 1131

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = -3

Query: 539 TNKPRPILVRFLSLRRCNEVWKNKTLLKGSRVIISEFLTKSRHD 408
           T KPR + V+  +++R NE+W+N  L +   V +++ L+    D
Sbjct: 266 TQKPR-LTVKQQAIKRENELWENNRLHRSGVVAMADELSSIFED 308


>AF120269-1|AAD13795.1| 1131|Caenorhabditis elegans sex
           determination protein MOG-1 protein.
          Length = 1131

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = -3

Query: 539 TNKPRPILVRFLSLRRCNEVWKNKTLLKGSRVIISEFLTKSRHD 408
           T KPR + V+  +++R NE+W+N  L +   V +++ L+    D
Sbjct: 266 TQKPR-LTVKQQAIKRENELWENNRLHRSGVVAMADELSSIFED 308


>AC024817-40|AAF59577.4|  967|Caenorhabditis elegans Hypothetical
           protein Y54G2A.21 protein.
          Length = 967

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = +3

Query: 279 FQMLKFKHL-FNLTAFIIREKDDYF-PICCPAALNAEMRAGLQKDIMT*FGQKF*ND 443
           FQ     HL   LT  ++ E  + F P  CP  L  +   G    IM+  G KF ND
Sbjct: 683 FQSFCGNHLKLLLTPAVVEETFNIFGPNLCPMLLGLKSAMGKLSTIMSLSGNKFLND 739


>AC024794-1|AAK68497.1|  994|Caenorhabditis elegans Hypothetical
           protein Y48G1BM.5 protein.
          Length = 994

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = +3

Query: 279 FQMLKFKHL-FNLTAFIIREKDDYF-PICCPAALNAEMRAGLQKDIMT*FGQKF*ND 443
           FQ     HL   LT  ++ E  + F P  CP  L  +   G    IM+  G KF ND
Sbjct: 159 FQSFCGNHLKLLLTPAVVEETFNIFGPNLCPMLLGLKSAMGKLSTIMSLSGNKFLND 215


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,045,573
Number of Sequences: 27780
Number of extensions: 309107
Number of successful extensions: 774
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)