Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0653
         (652 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g54620.1 68418.m06801 ankyrin repeat family protein contains ...    29   2.7  
At5g24040.1 68418.m02824 F-box family protein similar to unknown...    29   2.7  
At1g33880.1 68414.m04200 avirulence-responsive family protein / ...    28   6.2  
At4g31160.1 68417.m04423 transducin family protein / WD-40 repea...    27   8.2  
At4g11400.1 68417.m01838 ARID/BRIGHT DNA-binding domain-containi...    27   8.2  
At3g51490.1 68416.m05639 sugar transporter family protein simila...    27   8.2  

>At5g54620.1 68418.m06801 ankyrin repeat family protein contains
           Pfam domain, PF00023: Ankyrin repeat
          Length = 431

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 472 FFHTSLHRLKLRNLTNIGLGLLVLEPNR*QAVKSSSVQP 588
           F HT LH       T++ + L+VL+P   + + S  V P
Sbjct: 36  FVHTPLHEASSTGKTDLAMELMVLKPTFAKKLNSDGVSP 74


>At5g24040.1 68418.m02824 F-box family protein similar to unknown
           protein (gb|AAD22308.1) ; similar to SKP1 interacting
           partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 373

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 509 FLSLRRCNEVWKNKTLLKGSRVIISEFLTKSRHD 408
           F   R C++  K   L+ G ++I+ E  TKSR+D
Sbjct: 230 FQRSRPCDKTRKRWLLMTGDKLILVEMCTKSRYD 263


>At1g33880.1 68414.m04200 avirulence-responsive family protein /
           avirulence induced gene (AIG1) family protein similar to
           AIG1 protein SP:P54120 [Arabidopsis thaliana]; contains
           Pfam PF04548: AIG1 family;
          Length = 234

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 321 FIIREKDDYFPICCPAALNAEMR 389
           F  +E +DYFP CCP  L   +R
Sbjct: 150 FEAKEFEDYFPECCPEFLMRVLR 172


>At4g31160.1 68417.m04423 transducin family protein / WD-40 repeat
           family protein contains 2 WD-40 repeats (PF00400);
           KIAA0800 protein, Homo sapiens GI:3882321 EMBL:AB018343
          Length = 1846

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 428 LTKSRHDVFLEARSHFGVKRCWTTDGKIIVLLPDN 324
           L +S+  +FLE   HF   R     GK+ +L+ +N
Sbjct: 79  LLESQESLFLEENGHFSNARGSHNSGKLCILIREN 113


>At4g11400.1 68417.m01838 ARID/BRIGHT DNA-binding domain-containing
           protein / ELM2 domain-containing protein / Myb-like
           DNA-binding domain-containing protein similar to
           BRG1-binding protein ELD/OSA1 [Homo sapiens]
           GI:18568414; contains Pfam profiles PF01388: ARID/BRIGHT
           DNA binding domain, PF01448: ELM2 domain, PF00249:
           Myb-like DNA-binding domain
          Length = 573

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/29 (48%), Positives = 23/29 (79%), Gaps = 1/29 (3%)
 Frame = -1

Query: 274 SFPRLKKRKELLSHLGNL-MTNPRRHQNQ 191
           +FP+ KKR+EL+S+  N+ + N RR+QN+
Sbjct: 501 NFPK-KKREELVSYYFNVFLINRRRYQNR 528


>At3g51490.1 68416.m05639 sugar transporter family protein similar
           to D-xylose proton-symporter [Lactobacillus brevis]
           GI:2895856; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 729

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +3

Query: 438 NDDPRTLQECLVLPHFIASPQTQEPD*YRPRLIG 539
           N+D     E L  P  + SPQT EPD Y  R +G
Sbjct: 347 NEDSSDQDENLNSP--LLSPQTTEPDDYHQRTVG 378


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,186,286
Number of Sequences: 28952
Number of extensions: 290384
Number of successful extensions: 754
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)