Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0652
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces...    31   0.21 
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    28   1.1  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    25   7.8  

>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 265 STHLYIETSLRLYSHLKFKVWLKKYYNNKILLQQFQRSKHN 387
           STH  I  S+ +Y  L+   W K YY+N  +  +  +SK N
Sbjct: 101 STHPVISNSMHMYQFLENNSW-KSYYHNAWMQSENTKSKGN 140


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 383 IIKVQLKRSDSLYYESDISINH 448
           +I+  LK  D +YY  DI+INH
Sbjct: 556 VIEGYLKSPDDIYYTRDININH 577


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/50 (24%), Positives = 23/50 (46%)
 Frame = +1

Query: 232 RAAFRLATKPSSTHLYIETSLRLYSHLKFKVWLKKYYNNKILLQQFQRSK 381
           R  F+   K       ++ +L++Y+  +   W K ++N + LL   Q  K
Sbjct: 775 RKIFQKRLKDIQAIKLLQANLQVYNEFRTFPWAKLFFNLRPLLSSTQNDK 824


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,681,094
Number of Sequences: 5004
Number of extensions: 51582
Number of successful extensions: 120
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)