Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0652
         (697 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353...    29   2.7  
07_03_1688 + 28681455-28681569,28682115-28682413                       29   3.5  
06_02_0187 + 12805788-12807007,12807059-12807186,12807811-128078...    29   4.7  
03_05_0941 + 29008322-29009686,29009929-29010012,29010889-290110...    29   4.7  
04_04_0239 - 23843235-23843243,23843334-23844047,23844138-238442...    28   6.2  
03_06_0579 + 34870958-34874578                                         28   6.2  
06_03_1080 + 27436389-27436742,27437573-27437804,27437911-274381...    28   8.1  

>09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,
            3536083-3536226,3536974-3537375,3537499-3537721,
            3537830-3542368,3542480-3542599,3543005-3543038,
            3543922-3544102,3544198-3544815,3545022-3551098,
            3551139-3551304,3551508-3551614,3552056-3552178,
            3553417-3553642
          Length = 5100

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/49 (38%), Positives = 25/49 (51%)
 Frame = +2

Query: 341  ITIKYFSSSFNGVSIIKVQLKRSDSLYYESDISINHLKDN*DVQSDEED 487
            ++ K   +SF   S+I  QLK SDSL   ++   N   D  D  S EED
Sbjct: 1516 LSSKSSGNSFGSGSLIPKQLKNSDSLVLRTNQESNSTVDC-DASSGEED 1563


>07_03_1688 + 28681455-28681569,28682115-28682413
          Length = 137

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +2

Query: 494 VYDPHILVHWIQLICHAKSYKSPRGGARYPIRPIVSRITIHWAVVLQRRD 643
           +Y P +  H +   C + S+  PRG      + +V  I I WA+ L + D
Sbjct: 59  IYIPGLAPHTMLCKCTSTSHMHPRGKVGPTSQSLVELILIPWALFLLQLD 108


>06_02_0187 +
           12805788-12807007,12807059-12807186,12807811-12807859,
           12808508-12808853
          Length = 580

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = -1

Query: 664 GNARVFPVTTL*NDGPVNCNTTHYRANWVPGPPSRAFVAFSVAYKLDPVDENVGVIYACV 485
           G  R F V  L +      +  +++  W+P  P+ A    + AYK+ P D   G +Y  V
Sbjct: 145 GGPRTFAVVGLASKPAHVFSNPYFKCEWLPNAPAGAPPVRTKAYKMLP-DWGYGRVYTVV 203

Query: 484 LL 479
           ++
Sbjct: 204 VV 205


>03_05_0941 +
           29008322-29009686,29009929-29010012,29010889-29011052,
           29011208-29011233,29011494-29011583,29012135-29012229,
           29012328-29012495
          Length = 663

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +3

Query: 633 NVVTGKTLALPNLIALQHIPP 695
           N +TG+ +ALP++I ++H+ P
Sbjct: 171 NPITGEQIALPSVITIEHVNP 191


>04_04_0239 -
           23843235-23843243,23843334-23844047,23844138-23844287,
           23844389-23844601,23844697-23844811,23844919-23846300,
           23847217-23847279
          Length = 881

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +1

Query: 187 PGADDTAIVLPSLGNRAAFRLATKPSSTHL 276
           P A   AI +PS   RAA  L T+PSS H+
Sbjct: 794 PTAPAAAIGMPSATARAASCLPTEPSSDHI 823


>03_06_0579 + 34870958-34874578
          Length = 1206

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -2

Query: 234  TIPERWQHDCGIIGTRLALCYDRA 163
            T P+ W HDCG  G  L    D A
Sbjct: 969  TNPDGWDHDCGFDGVSLQYSLDAA 992


>06_03_1080 +
           27436389-27436742,27437573-27437804,27437911-27438159,
           27438467-27438517,27438676-27438936,27439019-27439071,
           27439201-27439315,27441666-27441920,27442423-27443480
          Length = 875

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 532 KLDPVDENVGVIYACVLLVGLYVL 461
           K   + EN  V+ ACV+L+GL+ L
Sbjct: 289 KFPELHENYTVLLACVILIGLFAL 312


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,765,075
Number of Sequences: 37544
Number of extensions: 348199
Number of successful extensions: 830
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)