Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0652
         (697 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L24158-1|AAA16099.1| 1000|Homo sapiens integrin alpha 9 protein ...    31   3.0  
D25303-1|BAA04984.1| 1035|Homo sapiens integrin alpha subunit pr...    31   3.0  

>L24158-1|AAA16099.1| 1000|Homo sapiens integrin alpha 9 protein
            protein.
          Length = 1000

 Score = 31.5 bits (68), Expect = 3.0
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = -1

Query: 574  GPPSRAFVAFSVAYKLDPVDENVGVIYACVLLVGLYVLIIFEVINAYVRFIVKRVR 407
            G P    V F   + L+P    VG I A  LLVG+ + ++  V+   + F  +R +
Sbjct: 922  GNPEEVTVVFEALHNLEPRGYVVGWIIAISLLVGILIFLLLAVLLWKMGFFRRRYK 977


>D25303-1|BAA04984.1| 1035|Homo sapiens integrin alpha subunit
            protein.
          Length = 1035

 Score = 31.5 bits (68), Expect = 3.0
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = -1

Query: 574  GPPSRAFVAFSVAYKLDPVDENVGVIYACVLLVGLYVLIIFEVINAYVRFIVKRVR 407
            G P    V F   + L+P    VG I A  LLVG+ + ++  V+   + F  +R +
Sbjct: 957  GNPEEVTVVFEALHNLEPRGYVVGWIIAISLLVGILIFLLLAVLLWKMGFFRRRYK 1012


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,095,915
Number of Sequences: 237096
Number of extensions: 1974510
Number of successful extensions: 3427
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3427
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8007229802
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)