Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0652
         (697 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41993-5|AAA83447.2|  451|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z49909-3|CAA90107.2|  603|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>U41993-5|AAA83447.2|  451|Caenorhabditis elegans Hypothetical
           protein F44A2.2 protein.
          Length = 451

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = +2

Query: 500 DPHILVHWIQLIC 538
           +PH L+HW++L+C
Sbjct: 213 EPHYLLHWLELLC 225


>Z49909-3|CAA90107.2|  603|Caenorhabditis elegans Hypothetical
           protein C14A4.3 protein.
          Length = 603

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 235 HDSREMAARLRYHRHPASFVLRQSLADG 152
           HD   +     +HR P+SF + Q+++DG
Sbjct: 451 HDPIRVCVGKEWHRFPSSFFIPQTVSDG 478


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,942,566
Number of Sequences: 27780
Number of extensions: 296839
Number of successful extensions: 739
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)