Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0651
(613 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 26 3.7
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy... 26 3.7
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa... 26 4.9
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc... 26 4.9
SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ... 26 4.9
SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 26 4.9
SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5 |Schizosacchar... 25 8.6
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo... 25 8.6
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 25 8.6
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 26.2 bits (55), Expect = 3.7
Identities = 18/59 (30%), Positives = 25/59 (42%)
Frame = +2
Query: 347 CTSCQPKPTRPNRCYKFLAQHALRWEEDYVPHEVIRIVEPSYVGMNNEYRISLAKKGGA 523
C CQP+P ++ +K R EE RI+ S NN+ R S K G +
Sbjct: 45 CEQCQPRPIDADKAHKIQLARLQREEEQ------SRILSRSR-SSNNKRRTSFGKNGAS 96
>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 874
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Frame = +1
Query: 235 DTMKLIVNWSGK-EFLRETW---TRFVEDSFPIVNDQEVMDVY 351
D ++ + W K + ++ W T E SFP++ND+E + V+
Sbjct: 230 DDLETLPKWPDKVKKMQRNWIGRTTGFEISFPLLNDKETLTVF 272
>SPAC22F8.07c |rtf1||replication termination factor
Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 25.8 bits (54), Expect = 4.9
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 184 GKNQKLTLFKEIRSVKPDTMKLIVNWSGKEFLRETWT 294
G N +TL KEI K NWS ++FL+ W+
Sbjct: 186 GANDIITLEKEIAMFKKKK-----NWSDEQFLQYVWS 217
>SPAC22E12.16c |pik1||phosphatidylinositol kinase
Pik1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 25.8 bits (54), Expect = 4.9
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Frame = +1
Query: 79 KNAKRKKHLVEHEQEEKQW-DLLD-----NYMVAEDPFLGPGKNQ--KLTLFKEIRSVKP 234
KN + + +V H+ + K+W DL D N + D + +++ L++ I+ + P
Sbjct: 354 KNKAKVQKIVSHKNQRKRWFDLTDVDPYTNLQDSTDNDISESESEGGDLSMSPLIKGLVP 413
Query: 235 DTMKLIVNWS 264
DT+ L ++S
Sbjct: 414 DTLSLSKSFS 423
>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 598
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 5/26 (19%)
Frame = -2
Query: 612 DGFVKVLPYNAV-----HKRLERVGV 550
DGFVK+LPY+ V + L R+G+
Sbjct: 247 DGFVKILPYDRVFSDAKNSNLTRIGI 272
>SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 335
Score = 25.8 bits (54), Expect = 4.9
Identities = 18/66 (27%), Positives = 29/66 (43%)
Frame = +2
Query: 377 PNRCYKFLAQHALRWEEDYVPHEVIRIVEPSYVGMNNEYRISLAKKGGAAQS*TFTGSTP 556
PN Y Q A + +DY E IRI+E V + + + +Q +F +TP
Sbjct: 42 PNALYHSQLQAACQKFQDYCDLEEIRIIEAKRVVERDLRSLEAKEVEEKSQFASFVSATP 101
Query: 557 TRSSRL 574
++ L
Sbjct: 102 PGANSL 107
>SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 327
Score = 25.0 bits (52), Expect = 8.6
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +1
Query: 40 YDNKYYKNLGCLIK-NAKRKKHLVEHEQEEKQWDLLDNYMVAED 168
Y+ Y L L K + K+ K + +H+ + W LLD +D
Sbjct: 238 YEESNYTRLPKLSKKDLKKSKRVKKHDYGGEDWSLLDRKFHDDD 281
>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/36 (27%), Positives = 17/36 (47%)
Frame = +1
Query: 208 FKEIRSVKPDTMKLIVNWSGKEFLRETWTRFVEDSF 315
F + S+ P +LIVN + + WT +D +
Sbjct: 109 FSSVNSLSPSLFQLIVNRMRFDAIHPEWTNGSDDEY 144
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 25.0 bits (52), Expect = 8.6
Identities = 18/52 (34%), Positives = 21/52 (40%)
Frame = +3
Query: 291 DPFC*GQLPHCKRPRGDGRVPRANLNPHAPTGATSSSLNTLLGGKKTTCPTK 446
+PF G D AN P++PT A SS N G TT P K
Sbjct: 362 NPFSPGYSGKSSMKSDDNVGSSANTAPNSPTSANSSEGNQ--GNGPTTYPIK 411
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,834,036
Number of Sequences: 5004
Number of extensions: 62089
Number of successful extensions: 156
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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