Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0651
         (613 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40980| Best HMM Match : ANF_receptor (HMM E-Value=0.00014)          33   0.14 
SB_32468| Best HMM Match : Drf_FH1 (HMM E-Value=2.6)                   31   0.74 
SB_25851| Best HMM Match : Laminin_G_2 (HMM E-Value=0)                 29   3.9  
SB_29838| Best HMM Match : EGF (HMM E-Value=1.2e-15)                   28   6.9  
SB_42339| Best HMM Match : LIM (HMM E-Value=8.9)                       28   6.9  
SB_23774| Best HMM Match : Kinesin (HMM E-Value=0)                     28   6.9  
SB_18769| Best HMM Match : LIM (HMM E-Value=8.9)                       28   6.9  
SB_35989| Best HMM Match : SEC-C (HMM E-Value=3.5)                     27   9.1  

>SB_40980| Best HMM Match : ANF_receptor (HMM E-Value=0.00014)
          Length = 735

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 19/50 (38%), Positives = 28/50 (56%)
 Frame = +1

Query: 16  PTIGRTYVYDNKYYKNLGCLIKNAKRKKHLVEHEQEEKQWDLLDNYMVAE 165
           PT  RT+  D+K   ++  L+K  K +   + +E E K+W  L NYM AE
Sbjct: 87  PTFARTFAVDSKVTPSVIALLKQFKWEIVAIIYE-EWKKWVQLKNYMKAE 135


>SB_32468| Best HMM Match : Drf_FH1 (HMM E-Value=2.6)
          Length = 416

 Score = 31.1 bits (67), Expect = 0.74
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -1

Query: 187 CPVLKRDLRQPCSCLKDPIASPLVHVRLGASCAWRF**DSPSFCNIYC 44
           CP + R +  PC  +K P++ P  +V    S    +   + S C  YC
Sbjct: 71  CPYVNRTVSVPCPYVKRPVSVPCPYVNRAVSVPCPYVNRAVSVCQPYC 118


>SB_25851| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
          Length = 683

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 8/53 (15%)
 Frame = -1

Query: 613 RWVCKSSPI*RGSQTTRTSWCTPCECS*LG--------SPALFSQTNSVFVVH 479
           R  C+S+P   G +     W + C+CS  G         P   S T S +V+H
Sbjct: 207 RNACRSNPCQNGGRCINKIWSSACDCSGTGFYGNQCTEEPPRLSMTASDYVIH 259


>SB_29838| Best HMM Match : EGF (HMM E-Value=1.2e-15)
          Length = 373

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 5/35 (14%)
 Frame = +3

Query: 150 LHGCRRSLFRTGQKPKT---YPF*RNS-QC-ETRY 239
           + GC  SL   GQ PK+   +PF R++ QC E+RY
Sbjct: 62  IFGCNMSLLNKGQSPKSRRVHPFARHAGQCAESRY 96


>SB_42339| Best HMM Match : LIM (HMM E-Value=8.9)
          Length = 279

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 43  DNKYYKNLGCLIKNAKRKKHL-VEHEQEEKQWDLLDNY 153
           D     N  C+ K  +  +HL VE++Q +K W   DN+
Sbjct: 168 DKTVDSNKCCICKEIQNLQHLFVEYKQVKKFWSAFDNW 205


>SB_23774| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 805

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/78 (20%), Positives = 41/78 (52%)
 Frame = +1

Query: 76  IKNAKRKKHLVEHEQEEKQWDLLDNYMVAEDPFLGPGKNQKLTLFKEIRSVKPDTMKLIV 255
           +K+ K++   ++ E ++ + +L    + A++      K ++L   KE+ +++ +   L  
Sbjct: 436 LKDLKKEHDALQSESKKDKAELAKLDIAAQEGLAAMEKVEELN--KEVIALREENKTLSD 493

Query: 256 NWSGKEFLRETWTRFVED 309
           N++ +  LR+ +   VED
Sbjct: 494 NFNSERILRKKYYNMVED 511


>SB_18769| Best HMM Match : LIM (HMM E-Value=8.9)
          Length = 279

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 43  DNKYYKNLGCLIKNAKRKKHL-VEHEQEEKQWDLLDNY 153
           D     N  C+ K  +  +HL VE++Q +K W   DN+
Sbjct: 168 DKTVDSNKCCICKEIQNLQHLFVEYKQVKKFWSAFDNW 205


>SB_35989| Best HMM Match : SEC-C (HMM E-Value=3.5)
          Length = 203

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 504 WLKRAGLPNHEHSQGVHQLVRVVCEPRYMGELL 602
           W++  G P  E+++     +RVVC+  YM E L
Sbjct: 121 WMREKGDPT-EYARRFVSSIRVVCDTTYMSETL 152


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,771,598
Number of Sequences: 59808
Number of extensions: 485286
Number of successful extensions: 1284
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1283
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)