Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0651
         (613 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73976-8|CAI79223.1|  215|Caenorhabditis elegans Hypothetical pr...    28   4.6  
U39666-3|AAA80410.2|  178|Caenorhabditis elegans Hypothetical pr...    27   8.0  
AL110477-5|CAB54329.1|  314|Caenorhabditis elegans Hypothetical ...    27   8.0  

>Z73976-8|CAI79223.1|  215|Caenorhabditis elegans Hypothetical
           protein T07C12.14 protein.
          Length = 215

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +1

Query: 97  KHLVEHEQEEKQWDLLDNYMVAEDPFLGPGKNQKLTLFKEIRSVK 231
           +HL + E E K+ D+L   ++AE  ++      +   F+E R  K
Sbjct: 35  EHLTQEEYERKKTDILRRAVLAESQYIALRTQLRDNKFREAREYK 79


>U39666-3|AAA80410.2|  178|Caenorhabditis elegans Hypothetical
           protein K04E7.1 protein.
          Length = 178

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -1

Query: 514 LFSQTNSVFVVHAHVGWLHNSDYFVGHVVFFPPKSVLSEELVAPVGACG 368
           L++ +  V+V ++   WLH S    G+V  FP  + L   LV     CG
Sbjct: 45  LYAVSFVVYVTNSICSWLHISFVVKGYVTSFPLNTWLVVSLVV-TAVCG 92


>AL110477-5|CAB54329.1|  314|Caenorhabditis elegans Hypothetical
           protein Y113G7B.7 protein.
          Length = 314

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +2

Query: 425 EDYVPHEVIRIVEPSYVGMNN 487
           +D +  EV+R+ +PSY+G +N
Sbjct: 268 DDEIEPEVVRLFDPSYIGNDN 288


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,917,537
Number of Sequences: 27780
Number of extensions: 356680
Number of successful extensions: 998
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)