Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0651
         (613 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g58250.1 68416.m06494 meprin and TRAF homology domain-contain...    31   0.60 
At5g45230.1 68418.m05551 disease resistance protein (TIR-NBS-LRR...    29   3.2  
At3g22980.1 68416.m02898 elongation factor Tu family protein sim...    29   3.2  
At4g01810.1 68417.m00238 protein transport protein-related relat...    28   4.2  
At2g04620.1 68415.m00470 cation efflux family protein potential ...    27   7.4  
At5g64460.2 68418.m08098 expressed protein                             27   9.8  
At5g64460.1 68418.m08097 expressed protein                             27   9.8  

>At3g58250.1 68416.m06494 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein similar to
           ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 317

 Score = 31.1 bits (67), Expect = 0.60
 Identities = 19/67 (28%), Positives = 30/67 (44%)
 Frame = +1

Query: 127 KQWDLLDNYMVAEDPFLGPGKNQKLTLFKEIRSVKPDTMKLIVNWSGKEFLRETWTRFVE 306
           K +  L +  +  D F+  G   +L  F +    K D + L ++ +  E L   W R  +
Sbjct: 16  KNFSSLQSEKIYSDQFVIDGCRWRLLAFPKGNDTKSDHLSLYLDVAESESLPCGWRRHAQ 75

Query: 307 DSFPIVN 327
            SF IVN
Sbjct: 76  FSFTIVN 82


>At5g45230.1 68418.m05551 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1231

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 21/80 (26%), Positives = 36/80 (45%)
 Frame = +1

Query: 58  KNLGCLIKNAKRKKHLVEHEQEEKQWDLLDNYMVAEDPFLGPGKNQKLTLFKEIRSVKPD 237
           KNL   I+N++    ++     E  W L +   + E    G G N+KL +      +K D
Sbjct: 54  KNLFKRIENSEIALAVLSSRYTESHWCLQELVKMMECSMKGEGCNKKLLVIPIFYKLKID 113

Query: 238 TMKLIVNWSGKEFLRETWTR 297
           T+K +    G+  L + W +
Sbjct: 114 TVKELDGDFGRN-LWDLWRK 132


>At3g22980.1 68416.m02898 elongation factor Tu family protein similar
            to eukaryotic translation elongation factor 2
            GB:NP_001952 [Homo sapiens]
          Length = 1015

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 154  MVAEDPFLGPGKNQKLTLFKEIRSVKPDTMKLIVN 258
            M+ EDPF  P   +++  F +  SV P+T + ++N
Sbjct: 953  MLEEDPFFVPKTEEEIEEFGDGASVLPNTARKLIN 987


>At4g01810.1 68417.m00238 protein transport protein-related related
           to Sec23 protein [Homo sapiens] gi|1296664|emb|CAA65774
          Length = 880

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 17/64 (26%), Positives = 24/64 (37%)
 Frame = +3

Query: 393 SSSLNTLLGGKKTTCPTK*SELWSHPTWA*TTNTELVWLKRAGLPNHEHSQGVHQLVRVV 572
           +S +    GG  T  P       SHP +     T + W++  G   H H+  V  L    
Sbjct: 424 NSRIIVCAGGPITYGPGSVPHSMSHPNYPYMEKTAIKWMENLGREAHRHNTVVDILCAGT 483

Query: 573 CEPR 584
           C  R
Sbjct: 484 CPLR 487


>At2g04620.1 68415.m00470 cation efflux family protein potential
           member of the cation diffusion facilitator (CDF) family,
           or cation efflux (CE) family, see PMID:11500563
          Length = 798

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +3

Query: 12  HPHHRAYLRVRQ*ILQK-LGLSYQKRQAQEAPSRT*TRGEAMGSFRQLHGCRRSL 173
           H HH  +   R  + Q  +G +Y        P+ + TR  +  S+R +HG + SL
Sbjct: 6   HHHHHQHRPNRLSVPQPTIGRTYPSFPYTPTPTPSKTRLSSSSSYRSIHGSKSSL 60


>At5g64460.2 68418.m08098 expressed protein
          Length = 282

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 492 TELVWLKRAGLPNHEHSQGVHQLVRVVCEPRYMGELLQT 608
           T+L W +   L  H HS G+H+ + +V     M   LQT
Sbjct: 50  TQLGWKQVDSLRKHVHSSGLHKKIELVISSPLM-RTLQT 87


>At5g64460.1 68418.m08097 expressed protein
          Length = 282

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 492 TELVWLKRAGLPNHEHSQGVHQLVRVVCEPRYMGELLQT 608
           T+L W +   L  H HS G+H+ + +V     M   LQT
Sbjct: 50  TQLGWKQVDSLRKHVHSSGLHKKIELVISSPLM-RTLQT 87


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,032,496
Number of Sequences: 28952
Number of extensions: 333989
Number of successful extensions: 939
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)