Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0650
(449 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha su... 48 9e-07
SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein L20|Sc... 27 1.3
SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|ch... 27 1.3
SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosom... 27 1.3
SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr 2||... 25 4.1
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |... 25 7.1
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc... 25 7.1
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 24 9.4
SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom... 24 9.4
>SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 306
Score = 47.6 bits (108), Expect = 9e-07
Identities = 21/59 (35%), Positives = 39/59 (66%)
Frame = -3
Query: 333 KHYKTAIDKIQENITEAGGVFNIQMGPKVVTATDEAKLAPQMERPKPKNAKVAGDSPEN 157
K + AI I+++IT + G ++M PK V+ TDE +LA M++ + +NA+++GD ++
Sbjct: 243 KKLEEAIGAIEKSITASNGTCTVKMKPKAVSETDELELADLMKKFEKENAEISGDEEDD 301
Score = 41.9 bits (94), Expect = 4e-05
Identities = 19/43 (44%), Positives = 29/43 (67%)
Frame = -2
Query: 448 ALKGGLALSTVNRPIKINVIAPPLYVMTTSTPEKTDGLKALQD 320
ALK + T PIK+ ++APPLYV+ T+ +K+ GLK L++
Sbjct: 205 ALKAAEDVHTEEVPIKVKLVAPPLYVLLTNALDKSLGLKKLEE 247
>SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein
L20|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 27.1 bits (57), Expect = 1.3
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = -3
Query: 339 VSKHYKTAIDKIQENITEAGGVFNIQMGPKVVTATDEAKLAPQMERPKPKNAKVAG 172
V K ++ + E++ ++ + ++M KV AT E ++ PKP AKV G
Sbjct: 20 VPKLFRMRLFAPNESVAKSRYWYFLKMINKVKKATGEIVAINEISEPKPLKAKVFG 75
>SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 272
Score = 27.1 bits (57), Expect = 1.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -2
Query: 301 REHHRSRWSLQHSDGA*SGDSDRRGKVGPTDGTP 200
R +H RW+ +HS+ + S S R V D +P
Sbjct: 83 RNNHVGRWANRHSNVSSSSGSRGRSSVSSRDSSP 116
>SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosomal
protein L20a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 27.1 bits (57), Expect = 1.3
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = -3
Query: 339 VSKHYKTAIDKIQENITEAGGVFNIQMGPKVVTATDEAKLAPQMERPKPKNAKVAG 172
V K ++ + E++ ++ + ++M KV AT E ++ PKP AKV G
Sbjct: 20 VPKLFRMRLFAPNESVAKSRYWYFLKMINKVKKATGEIVAINEISEPKPLKAKVFG 75
>SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.4 bits (53), Expect = 4.1
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 342 TVSKHYKTAIDKIQENITEAGGVFN 268
T S+ ++I I+ ITE GG+F+
Sbjct: 219 TYSQQRMSSIQNIESTITELGGIFS 243
>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 652
Score = 24.6 bits (51), Expect = 7.1
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -1
Query: 200 RSLKTLKSLVILPRTPGPKVWAMLT*MVTPNRTALRTKNTP 78
+ L TLK I+PRTP V +++ +P+ + + + P
Sbjct: 237 KQLLTLKQSTIIPRTPQKTVRSIVKQTSSPHSSKMPKHSLP 277
>SPBC16A3.08c |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 24.6 bits (51), Expect = 7.1
Identities = 12/57 (21%), Positives = 21/57 (36%)
Frame = -3
Query: 249 VVTATDEAKLAPQMERPKPKNAKVAGDSPENTRPQGMGDANMNGDPQQNGASHKKHP 79
V +T K P P+ + D P R G+ + ++ A++ HP
Sbjct: 45 VAQSTTSRKRDPNQPTPRERTVNKKADQPRRRRQAPQGNEAFAREGKEARANNAAHP 101
>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
zf-fungal binuclear cluster type |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 977
Score = 24.2 bits (50), Expect = 9.4
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = -3
Query: 144 GMGDANMNGDPQQNGASHKKH 82
G N N DP NGA+ + H
Sbjct: 759 GESQNNSNNDPSANGAARRLH 779
>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 412
Score = 24.2 bits (50), Expect = 9.4
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +1
Query: 91 VRSAVLLGVTIHVSIAHTLGPGVLGRITSDFSVFRLRAFHLWGQLCLVCRCHHFRPH 261
+ A G+T IA T GPG++G + + + A L L V HH + H
Sbjct: 108 ISDAARSGITDFDLIAVTRGPGMIGPLAVGLNTAKGLAVGLQKPLLAV---HHMQAH 161
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,899,726
Number of Sequences: 5004
Number of extensions: 38588
Number of successful extensions: 107
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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