BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ceN-0650 (449 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 03_02_0677 + 10343089-10343604,10344316-10344462,10344539-103446... 45 3e-05 07_03_1773 - 29422660-29422806,29423103-29423201,29423811-294239... 40 0.001 01_06_1652 + 38918159-38918377,38918502-38919428 30 0.75 07_03_0518 + 19007793-19008722 29 1.3 08_01_0532 - 4611650-4612706,4613405-4613757 29 1.7 01_05_0291 - 20515206-20516262,20516961-20517313 29 1.7 04_04_1449 - 33683791-33683940,33684036-33684110,33684849-336849... 28 3.0 12_02_0624 + 21325082-21325292,21325679-21325896,21327462-213279... 27 7.0 03_06_0507 + 34404843-34404968,34405091-34405151,34405260-344052... 27 7.0 07_03_0419 - 17993478-17993777,17994045-17994195,17994799-179950... 27 9.2 04_04_1358 + 32869222-32869306,32869947-32870008,32870301-328703... 27 9.2 03_05_0200 - 21911260-21911322,21911655-21911705,21911756-219118... 27 9.2 03_02_1010 - 13194002-13194339,13194421-13194573,13194661-131948... 27 9.2 03_02_0924 + 12429764-12430120,12430562-12430637,12430803-124308... 27 9.2 02_04_0179 + 20682852-20684510,20684593-20684661,20684741-206848... 27 9.2 02_01_0674 + 5020118-5020202,5020301-5020436,5021075-5021140,502... 27 9.2 01_05_0705 + 24424457-24424948,24425520-24425624,24426097-244262... 27 9.2 >03_02_0677 + 10343089-10343604,10344316-10344462,10344539-10344643, 10345411-10345509,10345662-10345814 Length = 339 Score = 44.8 bits (101), Expect = 3e-05 Identities = 21/59 (35%), Positives = 33/59 (55%) Frame = -2 Query: 448 ALKGGLALSTVNRPIKINVIAPPLYVMTTSTPEKTDGLKALQDGNRQNSREHHRSRWSL 272 A++ A N P+KI ++APPLYV+TT T +K G+ L D + + E + + L Sbjct: 223 AMRKAEAAGNDNCPVKIKLVAPPLYVLTTQTLDKDQGISVLTDAIKACTAEIEKHKGKL 281 >07_03_1773 - 29422660-29422806,29423103-29423201,29423811-29423915, 29423990-29424136,29424436-29424954 Length = 338 Score = 39.5 bits (88), Expect = 0.001 Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Frame = -2 Query: 448 ALKGGLALSTVNRPIKINVIAPPLYVMTTSTPEKTDGLKALQDGNRQ--NSREHHRSRWS 275 A++ A + P+KI ++A PLYV+TT T +K G+ L + + + E H+ + Sbjct: 224 AMRKAEAAGNKDCPVKIKLVAAPLYVLTTETLDKHQGISVLNNAIKACGETIEKHKGKLV 283 Query: 274 LQHSDGA*SGDSDR 233 ++ + A S DR Sbjct: 284 VKEAPRAVSEREDR 297 >01_06_1652 + 38918159-38918377,38918502-38919428 Length = 381 Score = 30.3 bits (65), Expect = 0.75 Identities = 18/69 (26%), Positives = 27/69 (39%) Frame = -3 Query: 339 VSKHYKTAIDKIQENITEAGGVFNIQMGPKVVTATDEAKLAPQMERPKPKNAKVAGDSPE 160 V+K YK + + G + + VV + +A Q P+P + P Sbjct: 122 VAKQYKLGGTSSRSCPPDQGSLSLVAKNTLVVAQSSRIYVAFQFTAPQPTPYLIYAVGPS 181 Query: 159 NTRPQGMGD 133 NT P G GD Sbjct: 182 NTNPSGNGD 190 >07_03_0518 + 19007793-19008722 Length = 309 Score = 29.5 bits (63), Expect = 1.3 Identities = 22/57 (38%), Positives = 28/57 (49%) Frame = +2 Query: 113 GSPFMLASPIPWGLVFSGESPATLAFLGFGRSICGANFASSVAVTTLGPI*MLKTPP 283 GS FM A+ I V E PA L + GR + G A+ T+GP+ KTPP Sbjct: 36 GSRFMEAAGIIVNTVAELE-PAVLEAIADGRCVPGRRVP---AIYTVGPVLSFKTPP 88 >08_01_0532 - 4611650-4612706,4613405-4613757 Length = 469 Score = 29.1 bits (62), Expect = 1.7 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%) Frame = -2 Query: 442 KGGLALSTVNRPIKINVIAPPLYVMTTSTPEKTDGLKALQDGN-RQNSREHHRSRWS 275 +GG N +++ P+Y+ S+P + + L+ DGN N R R W+ Sbjct: 125 RGGFMSYFGNHAQNSHLVGAPIYIADASSPPEVEILQGNDDGNGNGNVRTEKRILWT 181 >01_05_0291 - 20515206-20516262,20516961-20517313 Length = 469 Score = 29.1 bits (62), Expect = 1.7 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%) Frame = -2 Query: 442 KGGLALSTVNRPIKINVIAPPLYVMTTSTPEKTDGLKALQDGN-RQNSREHHRSRWS 275 +GG N +++ P+Y+ S+P + + L+ DGN N R R W+ Sbjct: 125 RGGFMSYFGNHAQNSHLVGAPIYIADASSPPEVEILQGNDDGNGNGNVRTEKRILWT 181 >04_04_1449 - 33683791-33683940,33684036-33684110,33684849-33684940, 33685020-33685106,33685460-33685615,33685706-33685804, 33686180-33686307,33687355-33687416 Length = 282 Score = 28.3 bits (60), Expect = 3.0 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%) Frame = -3 Query: 351 KRLTVSKHYKTAIDKIQENITEAGGVFNIQMGPKVVTATDEAKLAPQMERPK-PKNAKVA 175 KR ++ Y+T ID + I GVF+ G KV + + + PK + KVA Sbjct: 36 KRASMEDFYETRIDSVDGQIIGLFGVFDGHGGAKVAEYVKQNLFSHLLRHPKFISDTKVA 95 Query: 174 GD 169 D Sbjct: 96 ID 97 >12_02_0624 + 21325082-21325292,21325679-21325896,21327462-21327959, 21328008-21328049 Length = 322 Score = 27.1 bits (57), Expect = 7.0 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 5/58 (8%) Frame = -2 Query: 352 EKTDGLKALQDGNRQNSR-----EHHRSRWSLQHSDGA*SGDSDRRGKVGPTDGTPEA 194 E+ + K +DGN + +R W+ SD SGD DRR ++GP T E+ Sbjct: 27 EEEEESKRPRDGNDEEEELLTELSRYRRYWTDLWSDD--SGDIDRRTEIGPMRYTEES 82 >03_06_0507 + 34404843-34404968,34405091-34405151,34405260-34405296, 34405365-34405386,34405861-34405957,34406037-34406180, 34407034-34407173,34408205-34408255,34408347-34408429, 34408515-34408590,34408646-34408760,34409080-34409575, 34409682-34409895,34410000-34410070,34410527-34410695, 34410787-34410916,34411330-34411742,34411839-34412039 Length = 881 Score = 27.1 bits (57), Expect = 7.0 Identities = 15/55 (27%), Positives = 24/55 (43%) Frame = -2 Query: 364 TSTPEKTDGLKALQDGNRQNSREHHRSRWSLQHSDGA*SGDSDRRGKVGPTDGTP 200 TS ++ D DGN+ S +H+++ + + S RRGK T P Sbjct: 799 TSDGDRQDATPPTADGNQTLSSKHNQAGTPTKRKNRKDSHSEQRRGKAPKTKKEP 853 >07_03_0419 - 17993478-17993777,17994045-17994195,17994799-17995036, 17995133-17995343,17995440-17995618,17995735-17995833, 17996646-17997531 Length = 687 Score = 26.6 bits (56), Expect = 9.2 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%) Frame = -2 Query: 439 GGLALSTVNRPIKINVIAPPLYVMTTSTPEKTDG--LKALQD 320 GG A ++++V+ PPL+ + TP+ + G + LQD Sbjct: 190 GGAAAVRWYTTVRMDVVTPPLFSLMQCTPDMSGGDCRQCLQD 231 >04_04_1358 + 32869222-32869306,32869947-32870008,32870301-32870393, 32870640-32870761,32873139-32873167,32873586-32873891, 32873977-32874035,32874148-32874279,32874414-32874455, 32874560-32875093,32875189-32875379,32875538-32876027, 32876273-32876335,32876704-32876805,32876895-32877215, 32877294-32877386,32877484-32877585,32877718-32877822, 32877933-32878066,32878429-32878612,32879226-32879357, 32879447-32879559,32879628-32879709,32880328-32881992 Length = 1746 Score = 26.6 bits (56), Expect = 9.2 Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 2/21 (9%) Frame = -2 Query: 319 GNR--QNSREHHRSRWSLQHS 263 GNR + HHR RWSL H+ Sbjct: 107 GNRVAETMLSHHRGRWSLTHT 127 >03_05_0200 - 21911260-21911322,21911655-21911705,21911756-21911851, 21911947-21912045,21913213-21913526,21913621-21913696, 21913788-21915136,21915344-21915944 Length = 882 Score = 26.6 bits (56), Expect = 9.2 Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 2/84 (2%) Frame = -3 Query: 342 TVSKHYKTAIDKIQENITEAGGVFNIQMGPKVVTATDEAKLAPQMERPKP--KNAKVAGD 169 T+ K K+Q+ I++ P VT+ D A +MER K++ +A Sbjct: 142 TMGKPISLNAVKLQDTTLRREETEPIKLPPLEVTSHDSMSTAEKMERSAADVKHSTIAAG 201 Query: 168 SPENTRPQGMGDANMNGDPQQNGA 97 + E + + A M P GA Sbjct: 202 NTEEIVGENILYAEMENTPLSTGA 225 >03_02_1010 - 13194002-13194339,13194421-13194573,13194661-13194809, 13194932-13195184,13195282-13195469,13195684-13195841, 13196093-13196307,13196410-13196614 Length = 552 Score = 26.6 bits (56), Expect = 9.2 Identities = 18/56 (32%), Positives = 25/56 (44%) Frame = -3 Query: 252 KVVTATDEAKLAPQMERPKPKNAKVAGDSPENTRPQGMGDANMNGDPQQNGASHKK 85 K DEA+ P E+ K K + P+ Q A+ NGD ++NG KK Sbjct: 470 KPSNVADEAE--PGTEKKKKKKKHKLEEEPQE---QEKSVAHANGDAEENGTPKKK 520 >03_02_0924 + 12429764-12430120,12430562-12430637,12430803-12430849, 12431850-12431962,12432056-12432129,12432258-12432353, 12432440-12432559,12432660-12432893,12433486-12433634, 12434145-12434301,12434387-12434542,12435359-12435735, 12435871-12436020,12437071-12437253,12437440-12437643, 12437869-12437975,12438253-12438406,12438796-12438917, 12439541-12439787 Length = 1040 Score = 26.6 bits (56), Expect = 9.2 Identities = 11/20 (55%), Positives = 14/20 (70%) Frame = -2 Query: 343 DGLKALQDGNRQNSREHHRS 284 DG+ AL DG + + EHHRS Sbjct: 912 DGVSALLDGLDEETFEHHRS 931 >02_04_0179 + 20682852-20684510,20684593-20684661,20684741-20684809, 20686779-20688206 Length = 1074 Score = 26.6 bits (56), Expect = 9.2 Identities = 15/54 (27%), Positives = 23/54 (42%) Frame = -3 Query: 255 PKVVTATDEAKLAPQMERPKPKNAKVAGDSPENTRPQGMGDANMNGDPQQNGAS 94 P ++T T P +P+P+ A VA P + NG+P Q A+ Sbjct: 26 PPLLTGTAVPPPPPAAAQPQPQQATVAEGDPPPPATGSAEEVAGNGEPPQPPAT 79 >02_01_0674 + 5020118-5020202,5020301-5020436,5021075-5021140, 5021219-5021290,5021362-5021433,5024242-5024301, 5024494-5024565,5024655-5024720,5024798-5024863, 5024945-5025273,5025713-5025969,5026213-5026484, 5026580-5026715,5026833-5026972,5027051-5027207, 5027476-5027634 Length = 714 Score = 26.6 bits (56), Expect = 9.2 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%) Frame = -3 Query: 216 PQMERPKPKNAKVAGDSPE-NTRPQGMGD 133 P+ R +P + + +GD+PE + P G GD Sbjct: 254 PRRPRNRPSHPRGSGDAPEGSVSPAGQGD 282 >01_05_0705 + 24424457-24424948,24425520-24425624,24426097-24426207, 24426675-24426857,24427066-24427192,24427336-24427397, 24427638-24427724,24428703-24428789,24429210-24429323, 24429507-24429635,24429834-24429896,24430333-24430494, 24430611-24430729,24430786-24431794 Length = 949 Score = 26.6 bits (56), Expect = 9.2 Identities = 15/34 (44%), Positives = 18/34 (52%) Frame = +2 Query: 191 LGFGRSICGANFASSVAVTTLGPI*MLKTPPASV 292 LGFG I G + S + TT GP + P ASV Sbjct: 881 LGFGNPIGGRSTGSLSSSTTQGPPRLAPPPSASV 914 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,018,916 Number of Sequences: 37544 Number of extensions: 283644 Number of successful extensions: 905 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 887 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 904 length of database: 14,793,348 effective HSP length: 76 effective length of database: 11,940,004 effective search space used: 871620292 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -