Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0650
(449 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52918| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 1e-08
SB_46086| Best HMM Match : RVT_1 (HMM E-Value=1.6e-20) 29 1.8
SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_20247| Best HMM Match : Keratin_B2 (HMM E-Value=0.1) 28 4.1
SB_40282| Best HMM Match : Cwf_Cwc_15 (HMM E-Value=5.1) 28 4.1
SB_36416| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_23690| Best HMM Match : N6_N4_Mtase (HMM E-Value=0) 28 4.1
SB_4929| Best HMM Match : C2 (HMM E-Value=2.4e-33) 28 4.1
SB_45281| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_57573| Best HMM Match : 7tm_2 (HMM E-Value=3.7e-40) 27 7.2
SB_35068| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_59010| Best HMM Match : rve (HMM E-Value=0.0052) 27 9.5
SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05) 27 9.5
SB_24663| Best HMM Match : Exo_endo_phos (HMM E-Value=6.7e-05) 27 9.5
SB_8756| Best HMM Match : DUF1168 (HMM E-Value=1) 27 9.5
>SB_52918| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 313
Score = 56.0 bits (129), Expect = 1e-08
Identities = 26/50 (52%), Positives = 37/50 (74%)
Frame = -3
Query: 318 AIDKIQENITEAGGVFNIQMGPKVVTATDEAKLAPQMERPKPKNAKVAGD 169
A+D I+ +I ++GG FN + PK+VT TDE +LA QMER + +NA+V GD
Sbjct: 251 AVDVIRTSIKKSGGEFNEKAAPKIVTETDEIELAKQMERLEKENAEVDGD 300
Score = 44.8 bits (101), Expect = 3e-05
Identities = 22/41 (53%), Positives = 29/41 (70%)
Frame = -2
Query: 448 ALKGGLALSTVNRPIKINVIAPPLYVMTTSTPEKTDGLKAL 326
AL+ GL ST IK+N+IA PLYV+TT+T + +GL AL
Sbjct: 208 ALREGLECSTEEIAIKVNLIAAPLYVITTTTLDHEEGLNAL 248
>SB_46086| Best HMM Match : RVT_1 (HMM E-Value=1.6e-20)
Length = 723
Score = 29.1 bits (62), Expect = 1.8
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = -2
Query: 415 NRPIKINVI--APPLYVMTTSTPEKTDGLKALQDGNRQNSREHHRSRWSLQHS 263
++P+++ + +P LY+ TT T ++ K ++ + ++SR RW HS
Sbjct: 150 DKPVQLPKLGNSPLLYINTTRTSQQKKPKKTIERRDMRDSRIREFGRWLTAHS 202
>SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2708
Score = 29.1 bits (62), Expect = 1.8
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -3
Query: 255 PKVVTATDEAKLAPQMERPKPKNAKVAGDSPENTRPQGMGDANMNGDPQ-QNGASHKKHP 79
P+ A DE PQ++R + +++ D+P+ P G G + G + Q K HP
Sbjct: 2431 PEEKQAEDEE---PQIKRRRTLDSEEESDAPDKPGPSGEGGLDSRGSKEPQEAPRQKLHP 2487
>SB_20247| Best HMM Match : Keratin_B2 (HMM E-Value=0.1)
Length = 356
Score = 27.9 bits (59), Expect = 4.1
Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -2
Query: 433 LALSTVNRPIKINVIAP-PLYVMTTS 359
L L T+ PIKINVI P PL TT+
Sbjct: 19 LWLKTLRSPIKINVIRPNPLSTFTTT 44
>SB_40282| Best HMM Match : Cwf_Cwc_15 (HMM E-Value=5.1)
Length = 228
Score = 27.9 bits (59), Expect = 4.1
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 201 PKPKNAKVAGDSPENTRPQGMGDANM 124
P+PK A++A D P+N R + N+
Sbjct: 145 PEPKPARIASDKPKNARDERRNTENV 170
>SB_36416| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 185
Score = 27.9 bits (59), Expect = 4.1
Identities = 17/54 (31%), Positives = 30/54 (55%)
Frame = +1
Query: 76 IGVFFVRSAVLLGVTIHVSIAHTLGPGVLGRITSDFSVFRLRAFHLWGQLCLVC 237
+GV +S++L+G ++SIA TLG V G+I+ + RL + + +C
Sbjct: 35 LGVQPTKSSLLIG---YMSIASTLGRLVFGKISDSPCINRLHVYQFGFLVMAMC 85
>SB_23690| Best HMM Match : N6_N4_Mtase (HMM E-Value=0)
Length = 297
Score = 27.9 bits (59), Expect = 4.1
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +2
Query: 74 QLGCFLCEAPFCWGSPFMLASPIPW 148
+LG FL E F W +P L SPI W
Sbjct: 72 ELGFFLAE-DFYWHNPSKLPSPIEW 95
>SB_4929| Best HMM Match : C2 (HMM E-Value=2.4e-33)
Length = 567
Score = 27.9 bits (59), Expect = 4.1
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 201 PKPKNAKVAGDSPENTRPQGMGDANM 124
P+PK A++A D P+N R + N+
Sbjct: 137 PEPKPARIASDKPKNARDERRNTENV 162
>SB_45281| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1256
Score = 27.5 bits (58), Expect = 5.4
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Frame = -3
Query: 303 QENITEAGGVFNIQMG-PKVVTATDEAKLAPQMERPKPKNAKVAGDSPENTRPQGMGDAN 127
+E E G + + G P+VV PQ P P + + + P T+P+G D
Sbjct: 1175 EETPQETPGDQSTEQGNPEVVETPPATAEEPQQGLPAPASQEDSQAQPTETKPEGAEDNP 1234
Query: 126 MNGD 115
N +
Sbjct: 1235 ENAE 1238
>SB_57573| Best HMM Match : 7tm_2 (HMM E-Value=3.7e-40)
Length = 956
Score = 27.1 bits (57), Expect = 7.2
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 1 FIFILHLKHVRLQSTLYYDIKVLLSIGVFFVRSAVLLGV 117
F + K+ RL STL Y I + L I + ++A LLG+
Sbjct: 402 FYCVYWQKNERLTSTLRYKIHMQLCISLAVSQAAFLLGI 440
>SB_35068| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 532
Score = 27.1 bits (57), Expect = 7.2
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = -3
Query: 249 VVTATDEAKLAPQMERPKPKNAKVAGDSPENTRPQGMG--DANMNGDP 112
+VT TD K ++ P P+ +GD+P T G+ D ++G P
Sbjct: 175 IVTKTDPGKPTARITIPSPEAVDNSGDAPVITHDVGVAVKDFPISGKP 222
>SB_59010| Best HMM Match : rve (HMM E-Value=0.0052)
Length = 935
Score = 26.6 bits (56), Expect = 9.5
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = -3
Query: 246 VTATDEAKLAPQMERPKPKNAKVAGDSPENTRPQGMGDANMNGDPQQNGA 97
V A E +AP P+P A D+ T GM A+ P+ N A
Sbjct: 638 VVAAQELPVAPGPSEPQPGRRLRADDAASGTASAGMPSAHTPA-PESNSA 686
>SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05)
Length = 726
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -3
Query: 339 VSKHYKTAIDKIQENITEAGGVFNIQMGPKVVTATDEAKLAP 214
V K +KTA+D++ +I++AG +G ++ + A L P
Sbjct: 153 VDKDFKTAVDQLSYDISDAG--VKEHLGDPLLAVLESAILKP 192
>SB_24663| Best HMM Match : Exo_endo_phos (HMM E-Value=6.7e-05)
Length = 666
Score = 26.6 bits (56), Expect = 9.5
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -1
Query: 320 RQSTKFKRTSQKQVESSTFRWGLKW*QRQTRQSWPHR 210
R T ++RT Q ++ WG + RQ W HR
Sbjct: 617 RPKTTWRRTIQAELLEMGLTWGKALKVAKDRQEWRHR 653
>SB_8756| Best HMM Match : DUF1168 (HMM E-Value=1)
Length = 346
Score = 26.6 bits (56), Expect = 9.5
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = -2
Query: 403 KINV-IAPPLYVMTTSTPEKTDGLKALQDGNRQNSREHHRSRWS 275
K+NV P Y + EK +K Q+ NRQ R R W+
Sbjct: 66 KLNVTFVTPQYDTGVLSEEKVTNIKQAQEDNRQLLRIPRRPEWN 109
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,711,486
Number of Sequences: 59808
Number of extensions: 331766
Number of successful extensions: 884
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -