Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0650
(449 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical ... 30 0.68
U41035-2|AAM69088.1| 1371|Caenorhabditis elegans Uncoordinated p... 30 0.89
U41035-1|AAB37028.2| 1563|Caenorhabditis elegans Uncoordinated p... 30 0.89
AF257062-1|AAK49331.1| 1563|Caenorhabditis elegans Rab3-interact... 30 0.89
Z81123-5|CAB76411.2| 393|Caenorhabditis elegans Hypothetical pr... 28 2.7
Z50071-9|CAA90404.3| 393|Caenorhabditis elegans Hypothetical pr... 28 2.7
AF003388-2|AAB54267.2| 167|Caenorhabditis elegans Hypothetical ... 27 4.8
AF003138-5|AAL77178.1| 488|Caenorhabditis elegans Hypothetical ... 27 6.3
AF003138-3|AAM15568.1| 504|Caenorhabditis elegans Hypothetical ... 27 6.3
AF003138-2|AAM15567.1| 546|Caenorhabditis elegans Hypothetical ... 27 6.3
U29097-4|AAM98031.1| 308|Caenorhabditis elegans Hypothetical pr... 27 8.3
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 27 8.3
AL023845-1|CAA19539.1| 298|Caenorhabditis elegans Hypothetical ... 27 8.3
AF098997-6|AAC68716.1| 410|Caenorhabditis elegans Hypothetical ... 27 8.3
AF067612-4|AAM98010.1| 749|Caenorhabditis elegans Egg laying de... 27 8.3
AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical... 27 8.3
AC024796-3|AAK29895.4| 1161|Caenorhabditis elegans Hypothetical ... 27 8.3
>AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical
protein Y113G7B.12 protein.
Length = 1042
Score = 30.3 bits (65), Expect = 0.68
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -3
Query: 240 ATDEAKLAPQMERPKPKNAKVAGDSPENTRPQGMGDANMNGDPQQNG 100
A+D + + E + A G+ +N +G G+A+ NGD NG
Sbjct: 191 ASDNGEASDNGEESDNEEASDNGEESDNGEERGNGEASDNGDESDNG 237
Score = 26.6 bits (56), Expect = 8.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -3
Query: 174 GDSPENTRPQGMGDANMNGDPQQNG 100
G+ +N +G G+A+ NGD NG
Sbjct: 261 GEESDNGEERGNGEASDNGDESDNG 285
>U41035-2|AAM69088.1| 1371|Caenorhabditis elegans Uncoordinated
protein 10, isoform b protein.
Length = 1371
Score = 29.9 bits (64), Expect = 0.89
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = -3
Query: 255 PKVVTATDEAKLAPQMERPKPKNAKVAGDSPENTRPQGMGDANMNGDPQQNGASHKKHPN 76
P TD+ PQ R +P + + N +P+GMG + QQN + ++ N
Sbjct: 147 PSPQPLTDDNVPEPQQRRAEPPDKMNTPNYQNNQQPRGMGMQPNHNQTQQNFMNQNQNSN 206
>U41035-1|AAB37028.2| 1563|Caenorhabditis elegans Uncoordinated
protein 10, isoform a protein.
Length = 1563
Score = 29.9 bits (64), Expect = 0.89
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = -3
Query: 255 PKVVTATDEAKLAPQMERPKPKNAKVAGDSPENTRPQGMGDANMNGDPQQNGASHKKHPN 76
P TD+ PQ R +P + + N +P+GMG + QQN + ++ N
Sbjct: 147 PSPQPLTDDNVPEPQQRRAEPPDKMNTPNYQNNQQPRGMGMQPNHNQTQQNFMNQNQNSN 206
>AF257062-1|AAK49331.1| 1563|Caenorhabditis elegans Rab3-interacting
molecule UNC-10 protein.
Length = 1563
Score = 29.9 bits (64), Expect = 0.89
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = -3
Query: 255 PKVVTATDEAKLAPQMERPKPKNAKVAGDSPENTRPQGMGDANMNGDPQQNGASHKKHPN 76
P TD+ PQ R +P + + N +P+GMG + QQN + ++ N
Sbjct: 147 PSPQPLTDDNVPEPQQRRAEPPDKMNTPNYQNNQQPRGMGMQPNHNQTQQNFMNQNQNSN 206
>Z81123-5|CAB76411.2| 393|Caenorhabditis elegans Hypothetical
protein T07D4.1 protein.
Length = 393
Score = 28.3 bits (60), Expect = 2.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2
Query: 322 DGNRQNSREHHRSRWSLQHSDG 257
D NRQ+SR+ H S SL+ +G
Sbjct: 226 DSNRQSSRQSHESNGSLERGNG 247
>Z50071-9|CAA90404.3| 393|Caenorhabditis elegans Hypothetical
protein T07D4.1 protein.
Length = 393
Score = 28.3 bits (60), Expect = 2.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2
Query: 322 DGNRQNSREHHRSRWSLQHSDG 257
D NRQ+SR+ H S SL+ +G
Sbjct: 226 DSNRQSSRQSHESNGSLERGNG 247
>AF003388-2|AAB54267.2| 167|Caenorhabditis elegans Hypothetical
protein R10F2.4 protein.
Length = 167
Score = 27.5 bits (58), Expect = 4.8
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 258 GPKVVTATDEAKLAPQMERPKPKNAKVAGDSPENTRPQ 145
G V+ DEA P + K K ++ AG S T+P+
Sbjct: 87 GESVLNMFDEAVARPATAKTKVKRSESAGSSTTTTKPR 124
>AF003138-5|AAL77178.1| 488|Caenorhabditis elegans Hypothetical
protein F12B6.2b protein.
Length = 488
Score = 27.1 bits (57), Expect = 6.3
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 121 IHVSIAHTLGPGVLGRITSDFSVFRLR-AFH 210
++ IA TL P V+GRITS +++ + AF+
Sbjct: 364 LYAQIASTLAPIVIGRITSHGTIYEWKCAFY 394
>AF003138-3|AAM15568.1| 504|Caenorhabditis elegans Hypothetical
protein F12B6.2c protein.
Length = 504
Score = 27.1 bits (57), Expect = 6.3
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 121 IHVSIAHTLGPGVLGRITSDFSVFRLR-AFH 210
++ IA TL P V+GRITS +++ + AF+
Sbjct: 364 LYAQIASTLAPIVIGRITSHGTIYEWKCAFY 394
>AF003138-2|AAM15567.1| 546|Caenorhabditis elegans Hypothetical
protein F12B6.2a protein.
Length = 546
Score = 27.1 bits (57), Expect = 6.3
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 121 IHVSIAHTLGPGVLGRITSDFSVFRLR-AFH 210
++ IA TL P V+GRITS +++ + AF+
Sbjct: 406 LYAQIASTLAPIVIGRITSHGTIYEWKCAFY 436
>U29097-4|AAM98031.1| 308|Caenorhabditis elegans Hypothetical
protein F18C5.4 protein.
Length = 308
Score = 26.6 bits (56), Expect = 8.3
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 357 VEVVITYKGGAITLILIGLFTVD 425
VE+ TY+GGA T I+I VD
Sbjct: 107 VELTFTYRGGAATGIIIHRMAVD 129
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 26.6 bits (56), Expect = 8.3
Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 2/75 (2%)
Frame = -3
Query: 303 QENITEAGGVFNIQMGPKVVTATDEAKLAPQMERPKPKNAKVAGDSP--ENTRPQGMGDA 130
+E++ F + GPKV EA AP+ K +K + P + P D+
Sbjct: 112 EEDLDALLASFQEKDGPKVAEVAPEAVAAPEAAPVDDKKSKKKKEKPVEKPEEPAVEEDS 171
Query: 129 NMNGDPQQNGASHKK 85
+ GD + KK
Sbjct: 172 DGEGDEKDQDKKDKK 186
>AL023845-1|CAA19539.1| 298|Caenorhabditis elegans Hypothetical
protein Y51B9A.3 protein.
Length = 298
Score = 26.6 bits (56), Expect = 8.3
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 357 VEVVITYKGGAITLILIGLFTVD 425
VE+ TY+GGA T I+I VD
Sbjct: 107 VELTFTYRGGAATGIIIHRMAVD 129
>AF098997-6|AAC68716.1| 410|Caenorhabditis elegans Hypothetical
protein T10D4.3 protein.
Length = 410
Score = 26.6 bits (56), Expect = 8.3
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = -2
Query: 409 PIKINVIAPPLYVMTTSTPEKTD-GLKALQDGNRQNSR---EHHRSRWSLQHSD 260
P K+N++ P + + PE + G + +D +++ E + SRWS QH +
Sbjct: 269 PGKLNMVIPFFVRLWKNVPEPVEPGRQVFRDVELVDNKPQGEAYMSRWSAQHEE 322
>AF067612-4|AAM98010.1| 749|Caenorhabditis elegans Egg laying
defective protein 4,isoform c protein.
Length = 749
Score = 26.6 bits (56), Expect = 8.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 282 GGVFNIQMGPKVVTATDEAKLAPQME 205
GG F +Q+G + A + KL PQ+E
Sbjct: 17 GGAFLVQVGTRTFEAHELQKLIPQLE 42
>AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical
protein Y54F10BM.2 protein.
Length = 1173
Score = 26.6 bits (56), Expect = 8.3
Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 2/75 (2%)
Frame = -3
Query: 303 QENITEAGGVFNIQMGPKVVTATDEAKLAPQMERPKPKNAKVAGDSP--ENTRPQGMGDA 130
+E++ F + GPKV EA AP+ K +K + P + P D+
Sbjct: 112 EEDLDALLASFQEKDGPKVAEVAPEAVAAPEAAPVDDKKSKKKKEKPVEKPEEPAVEEDS 171
Query: 129 NMNGDPQQNGASHKK 85
+ GD + KK
Sbjct: 172 DGEGDEKDQDKKDKK 186
>AC024796-3|AAK29895.4| 1161|Caenorhabditis elegans Hypothetical
protein Y48G1C.5 protein.
Length = 1161
Score = 26.6 bits (56), Expect = 8.3
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = -3
Query: 315 IDKIQENITEAGGVFNIQMGPKVVTATDEAKLA 217
+DKIQ+N+++ Q P +VTA ++A ++
Sbjct: 519 LDKIQKNLSDLNSFRADQKFPPIVTAVEDALIS 551
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,818,424
Number of Sequences: 27780
Number of extensions: 233722
Number of successful extensions: 672
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -