Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0650
         (449 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    26   0.22 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.0  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    21   4.7  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   8.2  
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    21   8.2  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 25.8 bits (54), Expect = 0.22
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 182 LAFLGFGRSICGANFASSVAVTTL 253
           L  L +G SIC   FAS++AV TL
Sbjct: 274 LISLYYGVSICLVTFASALAVVTL 297


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 89  LCEAPFCWGSPFMLASP 139
           L EAP C G P +L +P
Sbjct: 364 LQEAPSCGGGPTILTTP 380


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = +3

Query: 351 SGVEVVITYKGGAITLILIGLFTV 422
           S V  +  Y+G  + L+++ +FT+
Sbjct: 277 STVGTIFGYQGTYVNLVIVKVFTI 300


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 325 QDGNRQNSREHHRSRWSLQHSDG 257
           Q+GNRQN  + + +R +    +G
Sbjct: 470 QNGNRQNDNKQNGNRQNDNKQNG 492


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -3

Query: 216 PQMERPKPKNAKVAGDSPENTRPQ 145
           P+  R K  + +  G +PE  RP+
Sbjct: 1   PRTRRVKRSDGRGNGGTPEEKRPR 24


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,760
Number of Sequences: 438
Number of extensions: 3079
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)