Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0650
(449 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g40290.1 68415.m04960 eukaryotic translation initiation facto... 42 1e-04
At5g05470.1 68418.m00589 eukaryotic translation initiation facto... 41 3e-04
At1g06550.1 68414.m00694 enoyl-CoA hydratase/isomerase family pr... 29 1.5
At5g47080.2 68418.m05803 casein kinase II beta chain, putative s... 29 1.9
At5g47080.1 68418.m05802 casein kinase II beta chain, putative s... 29 1.9
At3g57140.2 68416.m06362 patatin-related contains Patatin domain... 28 3.4
At3g57140.1 68416.m06361 patatin-related contains Patatin domain... 28 3.4
At2g34030.1 68415.m04166 calcium-binding EF hand family protein ... 28 3.4
At1g23400.1 68414.m02930 expressed protein 28 3.4
At3g48110.2 68416.m05246 aminoacyl-t-RNA synthetase, putative si... 27 4.4
At3g48110.1 68416.m05245 aminoacyl-t-RNA synthetase, putative si... 27 4.4
At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical ... 27 5.9
At5g41600.1 68418.m05054 reticulon family protein (RTNLB4) weak ... 27 5.9
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 27 5.9
At4g12730.1 68417.m01999 fasciclin-like arabinogalactan-protein ... 27 5.9
At2g29090.1 68415.m03536 cytochrome P450 family protein similar ... 27 5.9
At1g49420.1 68414.m05540 heavy-metal-associated domain-containin... 27 5.9
At1g07620.1 68414.m00817 GTP1/OBG family protein similar to SP|P... 27 5.9
At3g15840.1 68416.m02004 expressed protein 27 7.7
>At2g40290.1 68415.m04960 eukaryotic translation initiation factor 2
subunit 1, putative / eIF-2A, putative / eIF-2-alpha,
putative similar to Swiss-Prot:P05198 eukaryotic
translation initiation factor 2 subunit 1 (Eukaryotic
translation initiation factor 2 alpha subunit)
(eIF-2-alpha) (EIF- 2alpha) (EIF-2A) [Homo sapiens]
Length = 344
Score = 42.3 bits (95), Expect = 1e-04
Identities = 18/41 (43%), Positives = 27/41 (65%)
Frame = -2
Query: 448 ALKGGLALSTVNRPIKINVIAPPLYVMTTSTPEKTDGLKAL 326
A+K A + P+KI ++APPLYV+TT T +K G++ L
Sbjct: 227 AMKNAEAAGNEDCPVKIKLVAPPLYVLTTQTLDKEQGIEIL 267
>At5g05470.1 68418.m00589 eukaryotic translation initiation factor 2
subunit 1, putative / eIF-2A, putative / eIF-2-alpha,
putative similar to SWISS-PROT:P20459 eukaryotic
translation initiation factor 2 alpha subunit (eIF-2-
alpha) [Saccharomyces cerevisiae]; identical to cDNA
cohesin GI:6682280
Length = 344
Score = 41.1 bits (92), Expect = 3e-04
Identities = 19/41 (46%), Positives = 27/41 (65%)
Frame = -2
Query: 448 ALKGGLALSTVNRPIKINVIAPPLYVMTTSTPEKTDGLKAL 326
A+K A+ T + P+KI ++APPLYV+TT T K G+ L
Sbjct: 227 AMKKAEAVGTDDCPVKIKLVAPPLYVLTTHTHYKEKGIVTL 267
>At1g06550.1 68414.m00694 enoyl-CoA hydratase/isomerase family
protein similar to CHY1 [gi:8572760]; contains Pfam
profile PF00388 enoyl-CoA hydratase/isomerase family
protein
Length = 387
Score = 29.1 bits (62), Expect = 1.5
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = -2
Query: 442 KGGLALSTVNRPIKINVIAP 383
KG + L+T+NRP ++NVI+P
Sbjct: 18 KGSVRLTTLNRPRQLNVISP 37
>At5g47080.2 68418.m05803 casein kinase II beta chain, putative
similar to casein kinase II beta chain (CK II)
[Arabidopsis thaliana] SWISS-PROT:P40228
Length = 256
Score = 28.7 bits (61), Expect = 1.9
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = -3
Query: 255 PKVVTATDEAKLAPQMERPKPKNAKVAGDSPENTRPQGMGDANMNGDPQQNGASHK 88
P+VV D ++ +ERP P ++ + T AN+ G Q N +H+
Sbjct: 12 PEVV---DRKRINDALERPSPSTSRQVNGKGKGTVTAATTTANLIGKQQSNNINHR 64
>At5g47080.1 68418.m05802 casein kinase II beta chain, putative
similar to casein kinase II beta chain (CK II)
[Arabidopsis thaliana] SWISS-PROT:P40228
Length = 287
Score = 28.7 bits (61), Expect = 1.9
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = -3
Query: 255 PKVVTATDEAKLAPQMERPKPKNAKVAGDSPENTRPQGMGDANMNGDPQQNGASHK 88
P+VV D ++ +ERP P ++ + T AN+ G Q N +H+
Sbjct: 12 PEVV---DRKRINDALERPSPSTSRQVNGKGKGTVTAATTTANLIGKQQSNNINHR 64
>At3g57140.2 68416.m06362 patatin-related contains Patatin domain
PF01734
Length = 801
Score = 27.9 bits (59), Expect = 3.4
Identities = 20/70 (28%), Positives = 30/70 (42%)
Frame = -3
Query: 312 DKIQENITEAGGVFNIQMGPKVVTATDEAKLAPQMERPKPKNAKVAGDSPENTRPQGMGD 133
D +Q T G V N+ G + ++ + E P+ + V DSPE G
Sbjct: 727 DYLQTGRTHNGFVLNLVRGENLRMNSEPEDSQNESEIPETPES-VQLDSPEKDIIDGESS 785
Query: 132 ANMNGDPQQN 103
A+ +GD Q N
Sbjct: 786 ASEDGDAQAN 795
>At3g57140.1 68416.m06361 patatin-related contains Patatin domain
PF01734
Length = 801
Score = 27.9 bits (59), Expect = 3.4
Identities = 20/70 (28%), Positives = 30/70 (42%)
Frame = -3
Query: 312 DKIQENITEAGGVFNIQMGPKVVTATDEAKLAPQMERPKPKNAKVAGDSPENTRPQGMGD 133
D +Q T G V N+ G + ++ + E P+ + V DSPE G
Sbjct: 727 DYLQTGRTHNGFVLNLVRGENLRMNSEPEDSQNESEIPETPES-VQLDSPEKDIIDGESS 785
Query: 132 ANMNGDPQQN 103
A+ +GD Q N
Sbjct: 786 ASEDGDAQAN 795
>At2g34030.1 68415.m04166 calcium-binding EF hand family protein
contains INTERPRO:IPR002048 calcium-binding EF-hand
domain
Length = 566
Score = 27.9 bits (59), Expect = 3.4
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 333 KHYKTAIDKIQENITEAGGVFNIQMGPKVVTAT 235
K YK ++ +EN TE GV +++ PK T
Sbjct: 371 KQYKFNVEDQRENQTEENGVLKLEIKPKKTLVT 403
>At1g23400.1 68414.m02930 expressed protein
Length = 564
Score = 27.9 bits (59), Expect = 3.4
Identities = 19/64 (29%), Positives = 24/64 (37%)
Frame = -2
Query: 409 PIKINVIAPPLYVMTTSTPEKTDGLKALQDGNRQNSREHHRSRWSLQHSDGA*SGDSDRR 230
PI I AP T +TD N HHR+R+ +G S D DR
Sbjct: 35 PIPIPKYAPSNRNRNQKTNHQTDTNPKKPQSNPALKLPHHRTRYYKPVKEGVISSDGDRT 94
Query: 229 GKVG 218
+G
Sbjct: 95 ILIG 98
>At3g48110.2 68416.m05246 aminoacyl-t-RNA synthetase, putative
similar to aminoacyl-t-RNA synthetase GI:2654226 from
[Arabidopsis thaliana]; contains Pfam profiles: PF02092
glycyl-tRNA synthetase beta subunit,PF02091 glycyl-tRNA
synthetase alpha subunit
Length = 1063
Score = 27.5 bits (58), Expect = 4.4
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Frame = +2
Query: 110 WGSPFMLASPIPWGLVFSGESPATLAFLGF--GRSICGANFASSVAV 244
W S M + PI W + G+ +F G G CG +S ++
Sbjct: 530 WNSSVMFSRPIRWVMALHGDLVVPFSFAGISSGNVSCGLRNTASASL 576
>At3g48110.1 68416.m05245 aminoacyl-t-RNA synthetase, putative
similar to aminoacyl-t-RNA synthetase GI:2654226 from
[Arabidopsis thaliana]; contains Pfam profiles: PF02092
glycyl-tRNA synthetase beta subunit,PF02091 glycyl-tRNA
synthetase alpha subunit
Length = 1064
Score = 27.5 bits (58), Expect = 4.4
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Frame = +2
Query: 110 WGSPFMLASPIPWGLVFSGESPATLAFLGF--GRSICGANFASSVAV 244
W S M + PI W + G+ +F G G CG +S ++
Sbjct: 530 WNSSVMFSRPIRWVMALHGDLVVPFSFAGISSGNVSCGLRNTASASL 576
>At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical to
XRN2 [Arabidopsis thaliana] GI:11875630; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 1012
Score = 27.1 bits (57), Expect = 5.9
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = -3
Query: 312 DKIQENITEAGGVFNIQMGPKVVTATDEAKLAPQMERPK--PKNAKVAGDSPENT 154
+K +ENIT + Q K + +EAK+ Q ++ K K AK A +P T
Sbjct: 957 EKKKENITPQRKLTKAQRQVKHIRMMEEAKMIKQRKKEKYLRKKAKYAQGAPPKT 1011
>At5g41600.1 68418.m05054 reticulon family protein (RTNLB4) weak
similarity to Nogo-C protein [Rattus norvegicus]
GI:6822251, SP|O95197 Reticulon protein 3
(Neuroendocrine-specific protein-like) {Homo sapiens};
contains Pfam profile PF02453: Reticulon
Length = 257
Score = 27.1 bits (57), Expect = 5.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 154 GVLGRITSDFSVFRLRAFHLWGQLC 228
GVLG +T+ + +F L +HL LC
Sbjct: 82 GVLGAVTASWVLFELFEYHLLAFLC 106
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 27.1 bits (57), Expect = 5.9
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = -3
Query: 213 QMERPKPKNAKVAGDSPENTRPQGMGDANMNGDPQQNGASHK 88
+ + P P + G + T P+G GDA+M +Q+ K
Sbjct: 92 KFDAPSPDDLVSNGLTSSKTGPKGSGDASMRQKEKQDSVEQK 133
>At4g12730.1 68417.m01999 fasciclin-like arabinogalactan-protein
(FLA2) identical to gi_13377778_gb_AAK20858
Length = 403
Score = 27.1 bits (57), Expect = 5.9
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = -3
Query: 252 KVVTATDEAKLAPQMERPKPKNAKVAGDSPENTRPQGMGDANMNGDPQQNGA 97
++ A + AP+ + KPKNA+ D P P D ++ +NGA
Sbjct: 330 EIYKAVKTSAPAPKSSKKKPKNAEADADGPSADAP---SDDDVEVADDKNGA 378
>At2g29090.1 68415.m03536 cytochrome P450 family protein similar to
Cytochrome P450 88A3 (SP:O23051) [Arabidopsis thaliana];
similar to taxane 13-alpha-hydroxylase (GI:17148242)
[Taxus cuspidata].
Length = 482
Score = 27.1 bits (57), Expect = 5.9
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -3
Query: 348 RLTVSKHYKTAIDKIQENITEAGGVFNIQMGPK 250
R+ +S+ + I+K +EN E GG+ + +G K
Sbjct: 240 RIELSEELRKVIEKRRENGREEGGLLGVLLGAK 272
>At1g49420.1 68414.m05540 heavy-metal-associated domain-containing
protein contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 178
Score = 27.1 bits (57), Expect = 5.9
Identities = 15/53 (28%), Positives = 20/53 (37%)
Frame = -3
Query: 270 NIQMGPKVVTATDEAKLAPQMERPKPKNAKVAGDSPENTRPQGMGDANMNGDP 112
++ PK EA+ + E+PKP A GD G M G P
Sbjct: 74 HVAQKPKEPEKPKEAEKPKEPEKPKPAAAPAQGDPSSQRVTHGYNPPPMMGHP 126
>At1g07620.1 68414.m00817 GTP1/OBG family protein similar to SP|P20964
Spo0B-associated GTP-binding protein {Bacillus subtilis};
contains Pfam profile PF01018: GTP1/OBG family
Length = 1016
Score = 27.1 bits (57), Expect = 5.9
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = -2
Query: 427 LSTVNRPIKINVIAPPLYVMTTSTPEKTDGLKALQDGNRQNS 302
L + R +K I P V+ E DGLK L DGN + S
Sbjct: 964 LKELKRRVKGVKIFPVCAVLEEGVAELKDGLKMLVDGNGEPS 1005
>At3g15840.1 68416.m02004 expressed protein
Length = 268
Score = 26.6 bits (56), Expect = 7.7
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +1
Query: 226 CLVCRCHHFRPHLNVEDSTC 285
C+ HF P+ NV+D +C
Sbjct: 240 CMDTNSEHFNPYANVDDGSC 259
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,186,222
Number of Sequences: 28952
Number of extensions: 215315
Number of successful extensions: 692
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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