Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0649
         (342 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       25   0.16 
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    25   0.16 
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   0.87 
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    23   0.87 
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   2.6  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    21   4.6  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    20   8.1  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      20   8.1  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      20   8.1  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 25.4 bits (53), Expect = 0.16
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -1

Query: 117 CNRCPI*CSVKSAGASGRQSAQKYYQLSCPFC 22
           CN+C   C  KS   S  +S    Y+ SC  C
Sbjct: 261 CNKCDYTCVNKSMLNSHMKSHSNVYRYSCRDC 292


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 25.4 bits (53), Expect = 0.16
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -1

Query: 117 CNRCPI*CSVKSAGASGRQSAQKYYQLSCPFC 22
           CN+C   C  KS   S  +S    Y+ SC  C
Sbjct: 19  CNKCDYTCVNKSMLNSHMKSHSNVYRYSCRDC 50


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 23.0 bits (47), Expect = 0.87
 Identities = 11/40 (27%), Positives = 14/40 (35%)
 Frame = +2

Query: 68  PLAPADFTEHHMGHLLHYTREPQSSKATPPQRMLHTLGQG 187
           PL       HHMGH +              Q M++   QG
Sbjct: 156 PLTTQSMNNHHMGHHMQEQHPQHHQPHHQQQHMMYGGQQG 195


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 23.0 bits (47), Expect = 0.87
 Identities = 11/40 (27%), Positives = 14/40 (35%)
 Frame = +2

Query: 68  PLAPADFTEHHMGHLLHYTREPQSSKATPPQRMLHTLGQG 187
           PL       HHMGH +              Q M++   QG
Sbjct: 158 PLTTQSMNNHHMGHHMQEQHPQHHQPHHQQQHMMYGGQQG 197


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +3

Query: 222 TLDQPTQHMPHQLTPAYAPAFYLTYAGFPVYKSYFAP 332
           T   PT+    + +PA AP    T  G P   +  +P
Sbjct: 197 TTTSPTKVKASKASPAAAPRSVATPTGIPTPSTSASP 233


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 7/35 (20%), Positives = 18/35 (51%)
 Frame = +3

Query: 225 LDQPTQHMPHQLTPAYAPAFYLTYAGFPVYKSYFA 329
           +++  +++  Q    Y P +   Y  +PVY  +++
Sbjct: 237 VNERKENLTCQPAVPYVPFYRYCYRPYPVYNQWWS 271


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 19.8 bits (39), Expect = 8.1
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +3

Query: 204 HQPT*DTLDQPTQHMPHQLTPAYA 275
           H P  D + +   HMP    P++A
Sbjct: 352 HTPEPDCIHELLGHMPLLADPSFA 375


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 19.8 bits (39), Expect = 8.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 75  ASGRQSAQKYYQLS 34
           A GR+   KYY+L+
Sbjct: 519 ALGREEQAKYYELA 532


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 19.8 bits (39), Expect = 8.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 75  ASGRQSAQKYYQLS 34
           A GR+   KYY+L+
Sbjct: 411 ALGREEQAKYYELA 424


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,264
Number of Sequences: 336
Number of extensions: 1555
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6664455
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)