Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0649
         (342 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb...    27   0.80 
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s...    25   2.4  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      25   3.2  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    25   4.3  
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce...    24   5.6  
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    24   7.5  
SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual      23   9.8  
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon...    23   9.8  

>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 710

 Score = 27.1 bits (57), Expect = 0.80
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 104 GHLLHYT-REPQSSKATPPQRMLHTLGQGYLAYSAPAYLG 220
           GH  +Y   + QS KAT   + +  +    +A+S PAY G
Sbjct: 587 GHGTYYRILDDQSEKATSYNKSIKDMSSSDMAFSDPAYSG 626


>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
           subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +3

Query: 45  NTSVRFGDRSRRRTLRSIIWGTYCIIRGSPSHQKLRRPSVCCIL 176
           +++V FG+R      RSI+ G + + R S +  +LR P V  +L
Sbjct: 151 SSNVAFGNR------RSILAGNFILARASTAMARLRNPQVTELL 188


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 275 SICRSKLVRHMLSRLVQSILSRL 207
           SIC+ +L+R  ++RL  S+L  L
Sbjct: 514 SICKGRLIRDSINRLNGSLLGEL 536


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1402

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 237  TQHMPHQLTPAYAPAFYLTYAGFPVY 314
            T  MP   TP+Y P+F     G PV+
Sbjct: 1354 TSSMPRSFTPSYTPSF---LEGSPVF 1376


>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 642

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 39  VGNTSVRFGDRSRRRTLRSIIWGTYCIIRGSP 134
           V  T V+FG + +R T+ + + G+Y  +  SP
Sbjct: 178 VVQTCVKFGSKQQRETICAELAGSYVDLCKSP 209


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 175 FGPGVLSILCTSLLRI 222
           FGPGV S+ CT +  +
Sbjct: 268 FGPGVASLSCTGMATV 283


>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +3

Query: 228 DQPTQHMPHQLTPAYAPAFYLTYAGFPVYKSYFAP 332
           D P+ H  ++ TP   P      +G  VY+  + P
Sbjct: 137 DNPSVHTHNRTTPPIPPPHLPNASGSSVYQPPYTP 171


>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
           of oxoglutarate dehydrogenase complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = +1

Query: 31  AAKLVI--LLCALATARAGGLYGASYGAPI 114
           A KL I  +     T   GG++G+ YG PI
Sbjct: 356 AGKLAIEDMASGTFTISNGGIFGSLYGTPI 385


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,344,288
Number of Sequences: 5004
Number of extensions: 23573
Number of successful extensions: 58
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)