SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0649
         (342 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0186 + 1454533-1454710,1455299-1455420,1455508-1455806,145...    29   0.72 
05_02_0030 + 5826065-5826092,5826307-5828309,5828412-5828732,582...    29   1.3  
08_02_1478 - 27386280-27387046,27388154-27388201,27388631-27388724     27   2.9  
12_02_0973 + 24959440-24959451,24959962-24962195,24962539-249626...    27   3.9  
07_01_1006 + 8528508-8529285,8529376-8529544,8530179-8530445,853...    27   5.1  
01_05_0464 - 22470963-22472291                                         26   6.7  
09_04_0279 - 16349156-16349788,16352409-16353344                       26   8.9  
09_04_0278 + 16333261-16334172,16334900-16335532                       26   8.9  

>06_01_0186 +
           1454533-1454710,1455299-1455420,1455508-1455806,
           1455846-1455933,1456015-1456096,1457130-1457242
          Length = 293

 Score = 29.5 bits (63), Expect = 0.72
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = +2

Query: 56  ALWRPLAPADFTEHHMGHLLHYTREPQSSKATPP 157
           A WR  A AD   HH  H L  +  P +    PP
Sbjct: 4   AYWRYAAAADAARHHHHHQLPLSAAPAAGMPAPP 37


>05_02_0030 +
           5826065-5826092,5826307-5828309,5828412-5828732,
           5828821-5828907,5828981-5829583,5829680-5829844,
           5829941-5830235,5830320-5830534,5830621-5830926,
           5831200-5831263,5831384-5831623,5831756-5831853
          Length = 1474

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 16  DITKWAAKLVILLCALATARAG 81
           D+  W   LV+LLC     RAG
Sbjct: 165 DVAAWGVSLVLLLCVFVVGRAG 186


>08_02_1478 - 27386280-27387046,27388154-27388201,27388631-27388724
          Length = 302

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 43  VILLCALATARAGGLYGASYGAPIALY 123
           V+L C     R G L+G  YG P A++
Sbjct: 102 VVLTCVDCFLRGGSLHGFEYGVPPAVF 128


>12_02_0973 + 24959440-24959451,24959962-24962195,24962539-24962653,
            24963146-24963943,24964140-24964422,24964500-24964951,
            24965744-24965870,24965950-24966074,24966188-24966858,
            24966976-24967093,24967177-24967293,24967564-24967658,
            24968152-24968303,24968858-24968913,24969001-24969218,
            24969842-24970239,24970345-24970628,24970730-24970836,
            24970882-24970968,24971729-24971990,24972228-24972503,
            24973197-24973254,24973437-24973756,24973889-24973999,
            24974183-24974350,24974494-24974622,24974731-24974820,
            24974934-24975040,24975133-24975281,24975584-24975666,
            24975749-24975844,24975957-24976079,24976180-24976263,
            24976371-24976511,24976652-24976951,24977386-24977453,
            24977540-24977642,24979363-24979524,24979613-24981230,
            24981270-24981661,24981689-24981991,24982078-24982161,
            24982296-24982448,24982678-24982841,24982915-24983062,
            24983209-24983331,24983409-24983496,24983686-24983867
          Length = 4177

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = +2

Query: 62   WRPLAPADFTEHHMGHLLHYTREPQSSKATPPQRMLHTLGQGYLAYSAPAYL 217
            W+  A  D  +     +LH+++ P   KA  P R+ + L +  + Y    +L
Sbjct: 2284 WKQFASVDVIQETASFVLHFSKPP---KAALPYRIENCLNEASIMYFQKTFL 2332


>07_01_1006 + 8528508-8529285,8529376-8529544,8530179-8530445,
            8530533-8530878,8530964-8531101,8531197-8531322,
            8531422-8531634,8531721-8531863,8531891-8532009,
            8532099-8532295,8532379-8532729,8532811-8533395
          Length = 1143

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 174  VCSIRWGGVAFDDW 133
            +  +RW GVA DDW
Sbjct: 970  ILEMRWSGVAIDDW 983


>01_05_0464 - 22470963-22472291
          Length = 442

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
 Frame = +3

Query: 225 LDQP-TQHMP--HQL---TPAYAPAFYLTYAGFPVYKSY 323
           +DQP T HMP  HQL    P Y PA  +T +  P    Y
Sbjct: 142 VDQPSTSHMPYQHQLPQFAPTYTPAIPITPSLMPPISHY 180


>09_04_0279 - 16349156-16349788,16352409-16353344
          Length = 522

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 252 HQLTPAYAPAFYLTYAGFPV 311
           H+L+  Y P  YL +  FPV
Sbjct: 59  HELSRRYGPLVYLRFGSFPV 78


>09_04_0278 + 16333261-16334172,16334900-16335532
          Length = 514

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 252 HQLTPAYAPAFYLTYAGFPV 311
           H L+  Y P  YL +  FPV
Sbjct: 60  HNLSKKYGPLMYLRFGSFPV 79


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,771,822
Number of Sequences: 37544
Number of extensions: 185058
Number of successful extensions: 538
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -