Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0649
(342 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0186 + 1454533-1454710,1455299-1455420,1455508-1455806,145... 29 0.72
05_02_0030 + 5826065-5826092,5826307-5828309,5828412-5828732,582... 29 1.3
08_02_1478 - 27386280-27387046,27388154-27388201,27388631-27388724 27 2.9
12_02_0973 + 24959440-24959451,24959962-24962195,24962539-249626... 27 3.9
07_01_1006 + 8528508-8529285,8529376-8529544,8530179-8530445,853... 27 5.1
01_05_0464 - 22470963-22472291 26 6.7
09_04_0279 - 16349156-16349788,16352409-16353344 26 8.9
09_04_0278 + 16333261-16334172,16334900-16335532 26 8.9
>06_01_0186 +
1454533-1454710,1455299-1455420,1455508-1455806,
1455846-1455933,1456015-1456096,1457130-1457242
Length = 293
Score = 29.5 bits (63), Expect = 0.72
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = +2
Query: 56 ALWRPLAPADFTEHHMGHLLHYTREPQSSKATPP 157
A WR A AD HH H L + P + PP
Sbjct: 4 AYWRYAAAADAARHHHHHQLPLSAAPAAGMPAPP 37
>05_02_0030 +
5826065-5826092,5826307-5828309,5828412-5828732,
5828821-5828907,5828981-5829583,5829680-5829844,
5829941-5830235,5830320-5830534,5830621-5830926,
5831200-5831263,5831384-5831623,5831756-5831853
Length = 1474
Score = 28.7 bits (61), Expect = 1.3
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1
Query: 16 DITKWAAKLVILLCALATARAG 81
D+ W LV+LLC RAG
Sbjct: 165 DVAAWGVSLVLLLCVFVVGRAG 186
>08_02_1478 - 27386280-27387046,27388154-27388201,27388631-27388724
Length = 302
Score = 27.5 bits (58), Expect = 2.9
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 43 VILLCALATARAGGLYGASYGAPIALY 123
V+L C R G L+G YG P A++
Sbjct: 102 VVLTCVDCFLRGGSLHGFEYGVPPAVF 128
>12_02_0973 + 24959440-24959451,24959962-24962195,24962539-24962653,
24963146-24963943,24964140-24964422,24964500-24964951,
24965744-24965870,24965950-24966074,24966188-24966858,
24966976-24967093,24967177-24967293,24967564-24967658,
24968152-24968303,24968858-24968913,24969001-24969218,
24969842-24970239,24970345-24970628,24970730-24970836,
24970882-24970968,24971729-24971990,24972228-24972503,
24973197-24973254,24973437-24973756,24973889-24973999,
24974183-24974350,24974494-24974622,24974731-24974820,
24974934-24975040,24975133-24975281,24975584-24975666,
24975749-24975844,24975957-24976079,24976180-24976263,
24976371-24976511,24976652-24976951,24977386-24977453,
24977540-24977642,24979363-24979524,24979613-24981230,
24981270-24981661,24981689-24981991,24982078-24982161,
24982296-24982448,24982678-24982841,24982915-24983062,
24983209-24983331,24983409-24983496,24983686-24983867
Length = 4177
Score = 27.1 bits (57), Expect = 3.9
Identities = 13/52 (25%), Positives = 24/52 (46%)
Frame = +2
Query: 62 WRPLAPADFTEHHMGHLLHYTREPQSSKATPPQRMLHTLGQGYLAYSAPAYL 217
W+ A D + +LH+++ P KA P R+ + L + + Y +L
Sbjct: 2284 WKQFASVDVIQETASFVLHFSKPP---KAALPYRIENCLNEASIMYFQKTFL 2332
>07_01_1006 + 8528508-8529285,8529376-8529544,8530179-8530445,
8530533-8530878,8530964-8531101,8531197-8531322,
8531422-8531634,8531721-8531863,8531891-8532009,
8532099-8532295,8532379-8532729,8532811-8533395
Length = 1143
Score = 26.6 bits (56), Expect = 5.1
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -1
Query: 174 VCSIRWGGVAFDDW 133
+ +RW GVA DDW
Sbjct: 970 ILEMRWSGVAIDDW 983
>01_05_0464 - 22470963-22472291
Length = 442
Score = 26.2 bits (55), Expect = 6.7
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Frame = +3
Query: 225 LDQP-TQHMP--HQL---TPAYAPAFYLTYAGFPVYKSY 323
+DQP T HMP HQL P Y PA +T + P Y
Sbjct: 142 VDQPSTSHMPYQHQLPQFAPTYTPAIPITPSLMPPISHY 180
>09_04_0279 - 16349156-16349788,16352409-16353344
Length = 522
Score = 25.8 bits (54), Expect = 8.9
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +3
Query: 252 HQLTPAYAPAFYLTYAGFPV 311
H+L+ Y P YL + FPV
Sbjct: 59 HELSRRYGPLVYLRFGSFPV 78
>09_04_0278 + 16333261-16334172,16334900-16335532
Length = 514
Score = 25.8 bits (54), Expect = 8.9
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +3
Query: 252 HQLTPAYAPAFYLTYAGFPV 311
H L+ Y P YL + FPV
Sbjct: 60 HNLSKKYGPLMYLRFGSFPV 79
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,771,822
Number of Sequences: 37544
Number of extensions: 185058
Number of successful extensions: 538
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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