Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0649
         (342 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10095| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.3  
SB_45328| Best HMM Match : DUF1162 (HMM E-Value=6.1e-09)               27   3.0  
SB_46154| Best HMM Match : zf-C2H2 (HMM E-Value=7.9e-27)               27   4.0  
SB_44193| Best HMM Match : 7tm_1 (HMM E-Value=4.4e-12)                 27   5.3  
SB_40873| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.3  
SB_58868| Best HMM Match : Pkinase (HMM E-Value=1.9e-32)               27   5.3  
SB_23305| Best HMM Match : RVT_1 (HMM E-Value=0.0013)                  27   5.3  
SB_37798| Best HMM Match : Sec15 (HMM E-Value=1.8)                     26   7.0  
SB_25672| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.0  
SB_14715| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.0024)           26   7.0  
SB_29012| Best HMM Match : Avirulence (HMM E-Value=1.1)                26   9.2  

>SB_10095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 101

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 81  RTLRSIIWGTYCIIRGSPSHQKLRRPSVCCI 173
           R+++ I  GTYC IR +PS   +  P  CC+
Sbjct: 58  RSIKEIHDGTYCRIRSNPS---MASPYHCCL 85


>SB_45328| Best HMM Match : DUF1162 (HMM E-Value=6.1e-09)
          Length = 1508

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 135  SHQKLRRPSVCCILWARG 188
            SH K+ RPSVCC +++ G
Sbjct: 950  SHMKMVRPSVCCRVYSVG 967


>SB_46154| Best HMM Match : zf-C2H2 (HMM E-Value=7.9e-27)
          Length = 799

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
 Frame = +3

Query: 42  GNTSVRFGDRSRRRTLRSIIWG-----TYCIIRGSPSHQKLRRPSVCCILWARG 188
           GN +     ++   TL+++++G     T   +  S S+Q+LR+P   C +W  G
Sbjct: 19  GNKAAFCKKKTTVDTLKALVYGMRELITTTDVTSSRSYQELRQPQERCTIWDLG 72


>SB_44193| Best HMM Match : 7tm_1 (HMM E-Value=4.4e-12)
          Length = 863

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 7/44 (15%)
 Frame = +1

Query: 178 GPGVLSILCT-------SLLRILWTSLLSICRTSLLRHMLQLFI 288
           G G L++LC        S++ + W  +L+IC T +  HM +L+I
Sbjct: 243 GCGTLALLCVFLPPYVPSIMIVWWVYILAICTTMVALHM-RLYI 285


>SB_40873| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2496

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 278  WSICRSKLVRHMLSRLVQSILSRLVQSM 195
            W  C S L + + S LVQ+ILS++ + +
Sbjct: 1143 WRKCDSTLAKQLFSVLVQAILSQMDEKL 1170


>SB_58868| Best HMM Match : Pkinase (HMM E-Value=1.9e-32)
          Length = 434

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 122 TREPQSSKATPPQRMLHTLGQGYLAYSAP 208
           ++ PQ S A PP    H L +G+ +Y AP
Sbjct: 173 SKTPQDSPAVPPSATCHQLFRGF-SYVAP 200


>SB_23305| Best HMM Match : RVT_1 (HMM E-Value=0.0013)
          Length = 808

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 276 PAFYLTYAGFPVYKSY 323
           PA++  YA +PVY SY
Sbjct: 774 PAYHQVYANYPVYTSY 789


>SB_37798| Best HMM Match : Sec15 (HMM E-Value=1.8)
          Length = 1007

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 195 AKYPWPKVCSIRWGGVAFDDWGS 127
           A Y W  V +  W  VA D+W S
Sbjct: 297 ATYSWVSVATYNWVSVATDNWVS 319


>SB_25672| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 249

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +3

Query: 243 HMPHQLTPAYAPAFYLTYAGFPVYKSYF 326
           H+P  L P Y   ++L    +PVY+ ++
Sbjct: 160 HLPRVLYPVYRVFYHLPRVLYPVYRVFY 187


>SB_14715| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.0024)
          Length = 2040

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 156  PSVCCILWARGT*HTLHQPT*DTLDQPTQHMPHQL 260
            PS+C   W+RG  H +H     T+   +    HQ+
Sbjct: 1158 PSLCSSNWSRGLGHVVHAQNIRTIGNLSALKEHQI 1192


>SB_29012| Best HMM Match : Avirulence (HMM E-Value=1.1)
          Length = 444

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 53  CALWRPLAPADFTEHHMGHLLHYTREPQSSKATPPQRM 166
           CAL+R      F + H  H   +TR+   +  TPP R+
Sbjct: 223 CALYR------FHQTHCAHCTDFTRQTVRTVQTPPDRL 254


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,577,523
Number of Sequences: 59808
Number of extensions: 191943
Number of successful extensions: 532
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 498218920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)