Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0649
(342 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81047-7|CAB02834.1| 297|Caenorhabditis elegans Hypothetical pr... 29 1.2
AF016427-4|AAB65353.1| 774|Caenorhabditis elegans Hypothetical ... 28 1.5
U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical pr... 28 2.0
AF026208-2|AAB71269.3| 774|Caenorhabditis elegans Prion-like-(q... 26 6.1
Z46794-3|CAA86783.1| 429|Caenorhabditis elegans Hypothetical pr... 26 8.1
U50135-4|AAA93455.3| 1487|Caenorhabditis elegans Hypothetical pr... 26 8.1
U18781-1|AAB03374.1| 384|Caenorhabditis elegans alcohol dehydro... 26 8.1
AC025722-1|AAK68507.1| 554|Caenorhabditis elegans Hypothetical ... 26 8.1
AC006663-4|AAF39899.1| 384|Caenorhabditis elegans Hypothetical ... 26 8.1
AC006663-3|AAL32231.1| 386|Caenorhabditis elegans Hypothetical ... 26 8.1
>Z81047-7|CAB02834.1| 297|Caenorhabditis elegans Hypothetical
protein C41G6.9 protein.
Length = 297
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 99 IWGTYCIIRGSPSHQKLRRPSVCCI 173
I+G Y II +PSH K R S+ C+
Sbjct: 38 IFGAYLIIVKTPSHMKCARNSMLCL 62
>AF016427-4|AAB65353.1| 774|Caenorhabditis elegans Hypothetical
protein F32D1.3 protein.
Length = 774
Score = 28.3 bits (60), Expect = 1.5
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Frame = +3
Query: 159 SVCCILWARGT*HTLHQPT*DTLDQPTQHMPHQLTPA----YAPAFYLTYAGFPVYKSY 323
S+ + + R + + P D P H P+ LT A Y P F+L FP SY
Sbjct: 231 SLLALCYLRLSINNFQSPKFSKNDNPIAHEPNSLTRALTFMYLPVFHLNLIVFPKTLSY 289
>U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical protein
C18H2.1 protein.
Length = 1770
Score = 27.9 bits (59), Expect = 2.0
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 68 PLAPADFTEHHMGHLLHYTREPQSSKATPPQR 163
PL T HH G+ R+P+S++ P +R
Sbjct: 1519 PLQTTQVTAHHAGNASRPRRQPKSTQCVPRKR 1550
>AF026208-2|AAB71269.3| 774|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 40
protein.
Length = 774
Score = 26.2 bits (55), Expect = 6.1
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Frame = +2
Query: 89 TEHHMGHLLHYTREPQSSKATP--PQRMLHTLGQGYLAYSAPAYLGY 223
T HH H + + +S+ TP PQ T G ++ S Y G+
Sbjct: 701 TGHHQAHAIRTYQATKSASVTPPNPQPSAATRSSGRVSSSKKRYSGH 747
>Z46794-3|CAA86783.1| 429|Caenorhabditis elegans Hypothetical
protein R06F6.4 protein.
Length = 429
Score = 25.8 bits (54), Expect = 8.1
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Frame = -3
Query: 259 SW-CGIC*VGWSKVS*VGWCRVC 194
+W CGIC GW + G C +C
Sbjct: 251 AWTCGICVKGWMRNKENGQCELC 273
>U50135-4|AAA93455.3| 1487|Caenorhabditis elegans Hypothetical protein
C52E12.4 protein.
Length = 1487
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -1
Query: 117 CNRCPI*CSVKSAGASGRQ-SAQKYYQLSCPFCYIPR 10
C + + +++ A GRQ S KY++ +CP+ YI R
Sbjct: 1336 CGQKGLVLAIEQAFQLGRQESLLKYFRNTCPWDYIER 1372
>U18781-1|AAB03374.1| 384|Caenorhabditis elegans alcohol
dehydrogenase protein.
Length = 384
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -1
Query: 210 AGAEYAKYPWPKVCSIRWGGVAFDDWGS 127
AG E A P+ V W G AF W S
Sbjct: 304 AGQEIATRPFQLVTGRTWKGTAFGGWKS 331
>AC025722-1|AAK68507.1| 554|Caenorhabditis elegans Hypothetical
protein Y50D4C.2 protein.
Length = 554
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -1
Query: 210 AGAEYAKYPWPKVCSIRWGGVAFDDWGS 127
AG E A P+ V W G AF W S
Sbjct: 477 AGQEIATRPFQLVTGRTWKGTAFGGWKS 504
>AC006663-4|AAF39899.1| 384|Caenorhabditis elegans Hypothetical
protein H24K24.3a protein.
Length = 384
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -1
Query: 210 AGAEYAKYPWPKVCSIRWGGVAFDDWGS 127
AG E A P+ V W G AF W S
Sbjct: 304 AGQEIATRPFQLVTGRTWKGTAFGGWKS 331
>AC006663-3|AAL32231.1| 386|Caenorhabditis elegans Hypothetical
protein H24K24.3b protein.
Length = 386
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -1
Query: 210 AGAEYAKYPWPKVCSIRWGGVAFDDWGS 127
AG E A P+ V W G AF W S
Sbjct: 306 AGQEIATRPFQLVTGRTWKGTAFGGWKS 333
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,630,233
Number of Sequences: 27780
Number of extensions: 138833
Number of successful extensions: 375
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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