Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0649
         (342 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   4.1  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   4.1  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   4.1  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    20   9.5  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          20   9.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    20   9.5  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = +3

Query: 165 CCILWARGT*HTLHQPT 215
           CC++W   T  +L  P+
Sbjct: 76  CCVIWIFSTSKSLRTPS 92


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +1

Query: 178 GPGVLSILCTSLLRILWTSLLSICRTSL 261
           G  V+ ILC   L     SLL IC   L
Sbjct: 94  GELVMGILCKKTLGTSAGSLLHICMLEL 121


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = +3

Query: 165 CCILWARGT*HTLHQPT 215
           CC++W   T  +L  P+
Sbjct: 76  CCVIWIFSTSKSLRTPS 92


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +3

Query: 204 HQPT*DTLDQPTQHMPHQLTPAYA 275
           H P  D + +   HMP    P++A
Sbjct: 330 HTPEPDCIHELLGHMPLLADPSFA 353


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -1

Query: 87  KSAGASGRQSAQ 52
           K AGASGR+ A+
Sbjct: 97  KRAGASGRREAK 108


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +2

Query: 71  LAPADFTEHHMGHLLHYTREPQSSKATPP 157
           L   DFT   +  +L   RE  +  A PP
Sbjct: 187 LDTCDFTRDKVAPILVRARETPNYTACPP 215


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,811
Number of Sequences: 438
Number of extensions: 1933
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7839909
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)