Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0649
(342 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetica... 29 0.81
At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetica... 29 0.81
At5g37490.1 68418.m04515 U-box domain-containing protein similar... 28 1.4
At5g21040.1 68418.m02503 F-box family protein / WD-40 repeat fam... 27 2.5
At1g50460.1 68414.m05656 hexokinase, putative similar to hexokin... 27 4.3
At1g34790.1 68414.m04337 transparent testa 1 protein (TT1) / zin... 26 5.7
At1g26260.2 68414.m03204 basic helix-loop-helix (bHLH) family pr... 26 5.7
At1g26260.1 68414.m03203 basic helix-loop-helix (bHLH) family pr... 26 5.7
At4g39350.1 68417.m05570 cellulose synthase, catalytic subunit (... 26 7.6
At3g16510.1 68416.m02107 C2 domain-containing protein contains s... 26 7.6
At4g28560.1 68417.m04085 leucine-rich repeat family protein (fra... 25 10.0
At4g20350.1 68417.m02970 expressed protein hypothetical protein ... 25 10.0
At2g13350.1 68415.m01472 C2 domain-containing protein very low s... 25 10.0
>At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetical
protein contains similarity to ec31p [Oryza sativa]
gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
WD domain, G-beta repeat
Length = 1102
Score = 29.1 bits (62), Expect = 0.81
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 225 LDQPTQHMPHQLTPAYAPAF 284
+ QPT MPHQ PA P+F
Sbjct: 840 MQQPTMFMPHQAQPAPQPSF 859
>At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetical
protein contains similarity to ec31p [Oryza sativa]
gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
WD domain, G-beta repeat
Length = 1104
Score = 29.1 bits (62), Expect = 0.81
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 225 LDQPTQHMPHQLTPAYAPAF 284
+ QPT MPHQ PA P+F
Sbjct: 842 MQQPTMFMPHQAQPAPQPSF 861
>At5g37490.1 68418.m04515 U-box domain-containing protein similar to
immediate-early fungal elicitor protein CMPG1
[Petroselinum crispum] GI:14582200; contains Pfam
profile PF04564: U-box domain
Length = 435
Score = 28.3 bits (60), Expect = 1.4
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +3
Query: 39 VGNTSVRFGDRSRRRTLRSIIWGTYCIIRGSPSHQKLRRPSV 164
V NT + D+ T+R +I G +C+ +GSP Q++ P V
Sbjct: 74 VTNTVLTTFDQIPNHTIRKMIQG-WCVEKGSPLIQRIPTPRV 114
>At5g21040.1 68418.m02503 F-box family protein / WD-40 repeat family
protein contains G-protein beta WD-40 repeats
Length = 539
Score = 27.5 bits (58), Expect = 2.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 119 YTREPQSSKATPPQRMLHTLG 181
Y++ SS PPQRMLH G
Sbjct: 422 YSKRISSSTVEPPQRMLHGFG 442
>At1g50460.1 68414.m05656 hexokinase, putative similar to hexokinase
1 [Spinacia oleracea] Swiss-Prot:Q9SEK3
Length = 498
Score = 26.6 bits (56), Expect = 4.3
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 1 EFGTRDITKWAAKLVILLCALATARAGGLYGA 96
+ G D+ KLV+ +C + T RAG L A
Sbjct: 378 DIGVSDVPLKVRKLVVKICDVVTRRAGRLAAA 409
>At1g34790.1 68414.m04337 transparent testa 1 protein (TT1) / zinc
finger (C2H2 type) protein TT1 identical to transparent
testa 1 GI:18253279 from [Arabidopsis thaliana];
contains Pfam profile PF00096: Zinc finger, C2H2 type
Length = 303
Score = 26.2 bits (55), Expect = 5.7
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 95 HHMGHLLHYTREPQSSKATPPQRML 169
H GH Y + P+S K T P+ ML
Sbjct: 163 HMWGHGSQYRKGPESLKGTQPRAML 187
>At1g26260.2 68414.m03204 basic helix-loop-helix (bHLH) family
protein similar to bHLH transcription factor GBOF-1
GI:5923912 from [Tulipa gesneriana]
Length = 390
Score = 26.2 bits (55), Expect = 5.7
Identities = 10/29 (34%), Positives = 13/29 (44%)
Frame = +3
Query: 219 DTLDQPTQHMPHQLTPAYAPAFYLTYAGF 305
D L PH ++ Y P YL+ GF
Sbjct: 308 DALQSSAPTFPHNMSMLYPPVSYLSQTGF 336
>At1g26260.1 68414.m03203 basic helix-loop-helix (bHLH) family
protein similar to bHLH transcription factor GBOF-1
GI:5923912 from [Tulipa gesneriana]
Length = 390
Score = 26.2 bits (55), Expect = 5.7
Identities = 10/29 (34%), Positives = 13/29 (44%)
Frame = +3
Query: 219 DTLDQPTQHMPHQLTPAYAPAFYLTYAGF 305
D L PH ++ Y P YL+ GF
Sbjct: 308 DALQSSAPTFPHNMSMLYPPVSYLSQTGF 336
>At4g39350.1 68417.m05570 cellulose synthase, catalytic subunit
(Ath-A) identical to gi:2827141
Length = 1084
Score = 25.8 bits (54), Expect = 7.6
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -1
Query: 174 VCSIRWGGVAFDDW 133
+ ++WGGV DDW
Sbjct: 911 ILEMQWGGVGIDDW 924
>At3g16510.1 68416.m02107 C2 domain-containing protein contains
similarity to shock protein SRC2 [Glycine max]
gi|2055230|dbj|BAA19769 ; contains Pfam profile
PF00168:C2 domain
Length = 360
Score = 25.8 bits (54), Expect = 7.6
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +2
Query: 104 GHLLHYTREPQSSKATPPQRMLHTLGQGYLAYSAPAYLGY 223
GH H T+ QS P + G GY ++P Y GY
Sbjct: 273 GHSFHQTQPSQSFHGFAPSSPQNQHGYGYPPPTSPGY-GY 311
>At4g28560.1 68417.m04085 leucine-rich repeat family protein
(fragment) contains leucine rich-repeat domains
Pfam:PF00560, INTERPRO:IPR001611;
Length = 450
Score = 25.4 bits (53), Expect = 10.0
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = +2
Query: 89 TEHHMGHLLHYTREPQ-SSKAT 151
TE H+G+L YT+ P SS AT
Sbjct: 93 TEFHLGYLSDYTQNPPCSSNAT 114
>At4g20350.1 68417.m02970 expressed protein hypothetical protein -
Caenorhabditis elegans,SPTREMBL:Q17527
Length = 139
Score = 25.4 bits (53), Expect = 10.0
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +3
Query: 246 MPHQLTPAYAPAFYLTYAGFPVYKSY 323
MPHQ PAY P + G PV +
Sbjct: 1 MPHQDGPAYFPVVAILSLGSPVVMDF 26
>At2g13350.1 68415.m01472 C2 domain-containing protein very low
similarity to cold-regulated gene SRC2 [Glycine max]
GI:2055230; contains Pfam profile PF00168: C2 domain
Length = 401
Score = 25.4 bits (53), Expect = 10.0
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -1
Query: 114 NRCPI*CSVKSAGASGRQSAQK 49
N C I CS+ G+SG+++A+K
Sbjct: 375 NICGIECSIVCGGSSGQKAAKK 396
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,295,592
Number of Sequences: 28952
Number of extensions: 131005
Number of successful extensions: 376
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 409426656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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