Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0647
(637 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ... 33 0.046
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p... 31 0.11
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p... 31 0.14
SPBC18H10.17c |||mitochondrial ribosomal protein subunit Mrp49 |... 29 0.74
SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit Cut9|... 29 0.74
SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein Sad1|S... 29 0.74
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 27 1.7
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 27 3.0
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr... 26 4.0
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c... 26 5.2
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces... 25 6.9
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 25 6.9
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo... 25 6.9
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M... 25 9.1
>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 557
Score = 32.7 bits (71), Expect = 0.046
Identities = 20/56 (35%), Positives = 31/56 (55%)
Frame = +1
Query: 175 NWGTYILILYCPATIVFVYVWFMNESARWLLSKGRRDEAIDVLKRAAKINNLDPRS 342
+W T I + V V F+ ES R+L+ KGR +EA+ ++ + A+ LDP S
Sbjct: 177 SWRTSFGINILWGIFLMVGVLFLPESPRYLIYKGRDEEALRIMCQTAE---LDPES 229
>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 555
Score = 31.5 bits (68), Expect = 0.11
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +1
Query: 175 NWGTYILILYCPATIVFVYVWFMNESARWLLSKGRRDEAIDVLKRAAKIN 324
+W T I ++ V V F+ ES R+L+ KGR +EA+ ++ A+++
Sbjct: 177 SWRTSFGINMLWGILLMVGVLFLPESPRYLIYKGRDEEALRIMCNMAELS 226
>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 531
Score = 31.1 bits (67), Expect = 0.14
Identities = 35/146 (23%), Positives = 61/146 (41%), Gaps = 6/146 (4%)
Frame = +1
Query: 178 WGTYILILYCPATIVFVYVWFMNESARWLLSKGRRDEAIDVLKRAAKINNLDPRSLDLDA 357
W I I I + + F+ ES R+L+ G+ +EA+ VL +A+ L P S ++
Sbjct: 182 WRVSIGINLLWGIITMIGILFLPESPRYLIQVGKDEEAVRVLSESAE---LFPDSEEVQN 238
Query: 358 LGDPLLKPQNQTGDKKSQMYKAIRSGIIWKRVAICSFLWMTCSLV------YYGFSINSV 519
L ++ + +I I R + F+ L YYGFS+
Sbjct: 239 EYHRLKSSIDEEFAGGPCSWASIFGKDIRYRTFLGMFVMSLQQLTGNNYFFYYGFSVMQG 298
Query: 520 SLSSNRYVSFMLVTLVEIPAYIGGSH 597
+ ++ Y+S M++ V GG +
Sbjct: 299 AGINSPYLSAMILDAVNFGCTFGGMY 324
>SPBC18H10.17c |||mitochondrial ribosomal protein subunit Mrp49
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 175
Score = 28.7 bits (61), Expect = 0.74
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -1
Query: 634 NKVFFPPVFIQHDDYPQYRQVSPLTS 557
N+ F VF+Q +Y +YR V PLTS
Sbjct: 68 NESMFQSVFMQLLNYRKYRSVQPLTS 93
>SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit
Cut9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 28.7 bits (61), Expect = 0.74
Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Frame = +1
Query: 280 RDEAIDVLKRAAKINNLDPRSLDLDALGDPLLKPQNQTGDKKSQMYKAIRSGIIWKRVAI 459
R IDVL KI +DP +LD+ L L +++G+ K+++Y + S + R
Sbjct: 318 RSRFIDVLAITTKILEIDPYNLDVYPLH---LASLHESGE-KNKLY--LISNDLVDRHPE 371
Query: 460 CSFLWMTCSLVYYGFSINSVSLSSNRYVSFMLVTLVEI-PAYIGGSH 597
+ W+ + Y +N +S + RY S + PA+IG +H
Sbjct: 372 KAVTWLAVGIYY--LCVNKIS-EARRYFSKSSTMDPQFGPAWIGFAH 415
>SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein
Sad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 28.7 bits (61), Expect = 0.74
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +1
Query: 379 PQNQTGDKKSQMYKAIRSGIIWKRVAICSFLWMTCSLVYYGFSINSVSLSSN 534
P NQ +KSQ Y + ++W + + S L + +L++ G S S SS+
Sbjct: 152 PMNQRSTRKSQFYSSKFKPLLWFGITLFSTL-LIITLLHKGQEFYSRSFSSD 202
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 27.5 bits (58), Expect = 1.7
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Frame = +1
Query: 25 VTRERYLTFIVLFIVVE---LVGLKQRVIVSAMCNMTFVIGVVLIALLAWAVNNWGTYIL 195
VTRE + + V+ L G Q+VIV A+ + ++GV I L ++ ++ L
Sbjct: 1162 VTREEIKGTVAVVCEVDGYLLSGQGQKVIVRALEDEDHLVGVSFIDLGSYTLSAKCLRNL 1221
Query: 196 ILYCPATIVFVYVWFMNESARW-LLSKGRRDEAIDV 300
+L+ +V F E R L SKG+ EA++V
Sbjct: 1222 LLFGDVRQNVTFVGFAEEPYRMTLFSKGQ--EALNV 1255
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 26.6 bits (56), Expect = 3.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 615 PYLSSTMTTPNIGRYLH*RHEHEANVSVAT 526
P S T TTP+ + +H HE+NV ++T
Sbjct: 18 PNFSKTSTTPSTSQL---KHSHESNVKMST 44
>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 26.2 bits (55), Expect = 4.0
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +1
Query: 55 VLFIVVELVGLKQRVIVSAMCNMTFVIGVVLIALLAWAVNN 177
+L ++E++ L V +AMC +T +IG+ LI + + N
Sbjct: 780 LLLELIEVI-LNVNVSTTAMCLLTLLIGIYLILQVVFIYTN 819
>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 554
Score = 25.8 bits (54), Expect = 5.2
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Frame = +1
Query: 181 GTYILILYCPATIVFVYVWFMNESARWLLSKGRRDEAIDVLKRAAKINNLDPRSLDLDAL 360
G L+++ +V VY ES ++ L+KG +A++ + + A+IN +L ++ L
Sbjct: 258 GGMTLLMFAARFLVSVY-----ESPKFYLAKGDDYKAVETIHKIARING-KTCTLTVEEL 311
Query: 361 G--DPLLKPQNQTGDKKSQMYKAIRSG 435
D + ++ D KS K++ G
Sbjct: 312 YAIDRQEQEESDLDDSKSSDAKSVTQG 338
>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 720
Score = 25.4 bits (53), Expect = 6.9
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -3
Query: 125 VMLHMADTMTRCLRPTSSTTINRTMKV 45
++LH+AD M C T S +T+K+
Sbjct: 501 ILLHLADQMNACSLQTKSRESIKTLKL 527
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 25.4 bits (53), Expect = 6.9
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 297 RTETRRQDQQSRPEESGSRCARRSPAETAEPNRRQKVSDVQGHQI 431
R + ++ D + P E+GS + + T P RQKV V+G Q+
Sbjct: 7 RWQGKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVI-VKGGQL 50
>SPAC821.05 |||translation initiation factor
eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
Length = 357
Score = 25.4 bits (53), Expect = 6.9
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +3
Query: 315 QDQQSRPEESGSRCARRSPAETAEPNRRQKVSDVQGHQIWY 437
++++S +S S AR++ E A NR Q + V GH WY
Sbjct: 69 ENEESAVNKSVSGKARQAHTE-AMLNRLQYIGAVTGHVGWY 108
>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 531
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/46 (21%), Positives = 23/46 (50%)
Frame = +1
Query: 130 VIGVVLIALLAWAVNNWGTYILILYCPATIVFVYVWFMNESARWLL 267
++G ++ +W W L++ A ++ + +FM E++ W L
Sbjct: 228 LLGAAMVVAKSWRWQFW----LLMMISALVLVIITFFMPETSEWHL 269
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,624,402
Number of Sequences: 5004
Number of extensions: 54785
Number of successful extensions: 160
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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