Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0647
         (637 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    24   1.1  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              23   3.3  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          22   5.7  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          22   5.7  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          22   5.7  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   5.7  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   5.7  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    22   5.7  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   7.6  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   7.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   7.6  

>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 380 RRTKPETKSLRCTRPSD 430
           RRT+  T S+ C RPSD
Sbjct: 257 RRTECVTNSVTCDRPSD 273


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 354 CARRSPAETAEPNRRQ 401
           C R SP  T EP RR+
Sbjct: 32  CVRVSPVITIEPRRRK 47


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +3

Query: 264 SQQRTKGRSN*RTETRRQDQQSRPEESGSRCARRSPAETAEPNRR 398
           S QRT    +   ++R +D+ S   +    C+R    E  + +RR
Sbjct: 223 SFQRTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRSREYKKKDRR 267


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +3

Query: 264 SQQRTKGRSN*RTETRRQDQQSRPEESGSRCARRSPAETAEPNRR 398
           S QRT    +   ++R +D+ S   +    C+R    E  + +RR
Sbjct: 223 SFQRTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRSREYKKKDRR 267


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +3

Query: 264 SQQRTKGRSN*RTETRRQDQQSRPEESGSRCARRSPAETAEPNRR 398
           S QRT    +   ++R +D+ S   +    C+R    E  + +RR
Sbjct: 223 SFQRTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRSREYKKKDRR 267


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +3

Query: 264 SQQRTKGRSN*RTETRRQDQQSRPEESGSRCARRSPAETAEPNRR 398
           S QRT    +   ++R +D+ S   +    C+R    E  + +RR
Sbjct: 223 SFQRTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRSREYKKKDRR 267


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 12/52 (23%), Positives = 24/52 (46%)
 Frame = +3

Query: 264 SQQRTKGRSN*RTETRRQDQQSRPEESGSRCARRSPAETAEPNRRQKVSDVQ 419
           S QRT    +   ++R +D+ S   +    C+R    E  +  R  ++ +V+
Sbjct: 223 SFQRTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRSREYKKDRRYDQLHNVE 274


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +3

Query: 264 SQQRTKGRSN*RTETRRQDQQSRPEESGSRCARRSPAETAEPNRR 398
           S QRT    +   ++R +D+ S   +    C+R    E  + +RR
Sbjct: 223 SFQRTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRSREYKKKDRR 267


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +3

Query: 69  CGTGWPQ 89
           CG GWPQ
Sbjct: 579 CGCGWPQ 585


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 192 PYPLLPRHNRLRIR 233
           PYP  P +NR+ +R
Sbjct: 76  PYPRFPPYNRMDMR 89



 Score = 21.4 bits (43), Expect = 7.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 302 STSIASSLRPLLRSQRALSFINQTYTK 222
           S ++ S L P +RSQ       QTYT+
Sbjct: 253 SANLPSPLYPWMRSQFERKRGRQTYTR 279


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 140 TPITKVMLHMADTMTRCLRPTSSTTIN 60
           TP T V+     T+     P SST+IN
Sbjct: 841 TPTTSVISMSGTTVPITSLPASSTSIN 867


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,372
Number of Sequences: 438
Number of extensions: 3735
Number of successful extensions: 18
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)